Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016631A_C01 KMC016631A_c01
(486 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK52304.1| beta-mannosidase Man2 [Thermotoga neapolitana] 36 0.20
gb|EAA06418.1| agCP13237 [Anopheles gambiae str. PEST] 36 0.26
gb|AAL25303.1| GH09594p [Drosophila melanogaster] 34 0.75
gb|AAN71636.1| SD01955p [Drosophila melanogaster] 34 0.75
ref|NP_649436.2| CG12582-PA [Drosophila melanogaster] gi|2317055... 34 0.75
>gb|AAK52304.1| beta-mannosidase Man2 [Thermotoga neapolitana]
Length = 787
Score = 36.2 bits (82), Expect = 0.20
Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 9/124 (7%)
Frame = -1
Query: 471 LGYPSPQFIVFYFGYXRLISHYKKNMYSEERKEVNFSVIKLIKEQEGRN*MII-----QK 307
L YP + + + ++ +K +Y EE+K + +++++E +G I +K
Sbjct: 252 LWYPWNVGEPYLYDFTFILKESEKEVYREEKK-IGLRKVRILQEPDGEGKTFIFEINGEK 310
Query: 306 *IGVQFQRIWRDS--KFIKRIEYSEA--SALEVHHNKVKIWK*SLYESDCKYKESCDVLW 139
I D+ ++K +Y + A E + N +++W +YES+ YK CD L
Sbjct: 311 VFAKGANWIPADNILTWLKTEDYEKLVKMAKEANMNMLRVWGGGIYESEDFYK-LCDELG 369
Query: 138 LLIW 127
+++W
Sbjct: 370 IMVW 373
>gb|EAA06418.1| agCP13237 [Anopheles gambiae str. PEST]
Length = 963
Score = 35.8 bits (81), Expect = 0.26
Identities = 20/49 (40%), Positives = 29/49 (58%)
Frame = -1
Query: 273 DSKFIKRIEYSEASALEVHHNKVKIWK*SLYESDCKYKESCDVLWLLIW 127
DS ++K + Y+ A + H N +++W LYESD Y+ D L LLIW
Sbjct: 431 DSNYVKFLLYA---ARDAHMNMLRVWGGGLYESDHFYR-LADELGLLIW 475
>gb|AAL25303.1| GH09594p [Drosophila melanogaster]
Length = 536
Score = 34.3 bits (77), Expect = 0.75
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = -1
Query: 258 KRIEYSEASALEVHHNKVKIWK*SLYESDCKYKESCDVLWLLIW 127
++I + SA E H N +++W +YESD Y + D L LLIW
Sbjct: 21 EQISHLLRSAKEAHMNMLRVWGGGVYESDYFY-QLADSLGLLIW 63
>gb|AAN71636.1| SD01955p [Drosophila melanogaster]
Length = 778
Score = 34.3 bits (77), Expect = 0.75
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = -1
Query: 258 KRIEYSEASALEVHHNKVKIWK*SLYESDCKYKESCDVLWLLIW 127
++I + SA E H N +++W +YESD Y + D L LLIW
Sbjct: 263 EQISHLLRSAKEAHMNMLRVWGGGVYESDYFY-QLADSLGLLIW 305
>ref|NP_649436.2| CG12582-PA [Drosophila melanogaster] gi|23170550|gb|AAF52172.2|
CG12582-PA [Drosophila melanogaster]
Length = 908
Score = 34.3 bits (77), Expect = 0.75
Identities = 18/44 (40%), Positives = 26/44 (58%)
Frame = -1
Query: 258 KRIEYSEASALEVHHNKVKIWK*SLYESDCKYKESCDVLWLLIW 127
++I + SA E H N +++W +YESD Y + D L LLIW
Sbjct: 393 EQISHLLRSAKEAHMNMLRVWGGGVYESDYFY-QLADSLGLLIW 435
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 369,403,270
Number of Sequences: 1393205
Number of extensions: 6940425
Number of successful extensions: 18415
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 18025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18409
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
