Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016624A_C01 KMC016624A_c01
(613 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO00709.1| putative gibberellin 20-oxidase [Oryza sativa (ja... 150 1e-35
gb|AAM92286.1| putative gibberellin oxidase [Oryza sativa (japon... 150 1e-35
emb|CAB88075.1| hypothetical protein [Arabidopsis thaliana] 149 3e-35
ref|NP_680716.1| similar to gibberellin oxidase-like protein; pr... 149 3e-35
gb|AAO00707.1| putative gibberellin 20-oxidase [Oryza sativa (ja... 148 6e-35
>gb|AAO00709.1| putative gibberellin 20-oxidase [Oryza sativa (japonica
cultivar-group)]
Length = 308
Score = 150 bits (379), Expect = 1e-35
Identities = 64/88 (72%), Positives = 76/88 (85%)
Frame = -1
Query: 613 WEDVAHVEGALIVNIGDLMERWTNCIYRSTLHRVMPTGKERYSVAFFLDPPSECLVECFE 434
WEDV H++GALI+NIGDL+ERWTNC++RSTLHRV+ GKERYSVAFFLDP + +V+C E
Sbjct: 220 WEDVHHIDGALIINIGDLLERWTNCVFRSTLHRVVAVGKERYSVAFFLDPDPDLVVQCLE 279
Query: 433 SCCSESSPPRFPPIRSGDYLNERFRLTY 350
SCCSE+ PPRFPPI+SGDYL ER TY
Sbjct: 280 SCCSEACPPRFPPIKSGDYLEERLSSTY 307
>gb|AAM92286.1| putative gibberellin oxidase [Oryza sativa (japonica
cultivar-group)]
Length = 381
Score = 150 bits (379), Expect = 1e-35
Identities = 64/88 (72%), Positives = 76/88 (85%)
Frame = -1
Query: 613 WEDVAHVEGALIVNIGDLMERWTNCIYRSTLHRVMPTGKERYSVAFFLDPPSECLVECFE 434
WEDV H++GALI+NIGDL+ERWTNC++RSTLHRV+ GKERYSVAFFLDP + +V+C E
Sbjct: 293 WEDVHHIDGALIINIGDLLERWTNCVFRSTLHRVVAVGKERYSVAFFLDPDPDLVVQCLE 352
Query: 433 SCCSESSPPRFPPIRSGDYLNERFRLTY 350
SCCSE+ PPRFPPI+SGDYL ER TY
Sbjct: 353 SCCSEACPPRFPPIKSGDYLEERLSSTY 380
>emb|CAB88075.1| hypothetical protein [Arabidopsis thaliana]
Length = 305
Score = 149 bits (376), Expect = 3e-35
Identities = 65/90 (72%), Positives = 76/90 (84%)
Frame = -1
Query: 613 WEDVAHVEGALIVNIGDLMERWTNCIYRSTLHRVMPTGKERYSVAFFLDPPSECLVECFE 434
WEDV ++GA IVNIGD+MERWTN ++RSTLHRVMP GKERYSV FFLDP +C V+C E
Sbjct: 215 WEDVPGIKGAFIVNIGDMMERWTNGLFRSTLHRVMPVGKERYSVVFFLDPNPDCNVKCLE 274
Query: 433 SCCSESSPPRFPPIRSGDYLNERFRLTYGS 344
SCCSE+ PPRFPPI +GDY+ ERFRLTY +
Sbjct: 275 SCCSETCPPRFPPILAGDYIKERFRLTYAT 304
>ref|NP_680716.1| similar to gibberellin oxidase-like protein; protein id:
At4g16765.1 [Arabidopsis thaliana]
Length = 247
Score = 149 bits (376), Expect = 3e-35
Identities = 65/90 (72%), Positives = 76/90 (84%)
Frame = -1
Query: 613 WEDVAHVEGALIVNIGDLMERWTNCIYRSTLHRVMPTGKERYSVAFFLDPPSECLVECFE 434
WEDV ++GA IVNIGD+MERWTN ++RSTLHRVMP GKERYSV FFLDP +C V+C E
Sbjct: 157 WEDVPGIKGAFIVNIGDMMERWTNGLFRSTLHRVMPVGKERYSVVFFLDPNPDCNVKCLE 216
Query: 433 SCCSESSPPRFPPIRSGDYLNERFRLTYGS 344
SCCSE+ PPRFPPI +GDY+ ERFRLTY +
Sbjct: 217 SCCSETCPPRFPPILAGDYIKERFRLTYAT 246
>gb|AAO00707.1| putative gibberellin 20-oxidase [Oryza sativa (japonica
cultivar-group)]
Length = 357
Score = 148 bits (373), Expect = 6e-35
Identities = 65/88 (73%), Positives = 74/88 (83%)
Frame = -1
Query: 613 WEDVAHVEGALIVNIGDLMERWTNCIYRSTLHRVMPTGKERYSVAFFLDPPSECLVECFE 434
WEDV H++GALIVNIGDL+ERWTNCIYRST+HRV+ GKERYS AFFLDP + +V+C E
Sbjct: 269 WEDVHHIDGALIVNIGDLLERWTNCIYRSTVHRVVAVGKERYSAAFFLDPNPDLVVQCLE 328
Query: 433 SCCSESSPPRFPPIRSGDYLNERFRLTY 350
SCCSES PPRF PI+SGDYL ER TY
Sbjct: 329 SCCSESCPPRFSPIKSGDYLKERLSATY 356
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 543,953,617
Number of Sequences: 1393205
Number of extensions: 11811990
Number of successful extensions: 27800
Number of sequences better than 10.0: 580
Number of HSP's better than 10.0 without gapping: 26617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27618
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
