Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016609A_C01 KMC016609A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190636.1| U1 small nuclear ribonucleoprotein 70 (U1-70k);... 287 8e-77
ref|NP_680123.1| U1 small nuclear ribonucleoprotein 70 (U1-70k);... 280 1e-74
gb|AAK52534.1|AC078891_3 Putative U1 small nuclear ribonucleopro... 228 3e-59
ref|NP_003080.1| U1 small nuclear ribonucleoprotein 70 kDa; smal... 122 4e-27
gb|AAA36571.1| ribonucleoprotein antigen gi|26346286|dbj|BAC3679... 122 4e-27
>ref|NP_190636.1| U1 small nuclear ribonucleoprotein 70 (U1-70k); protein id:
At3g50670.1, supported by cDNA: gi_14532499, supported
by cDNA: gi_20334805 [Arabidopsis thaliana]
gi|13633916|sp|Q42404|RU17_ARATH U1 small nuclear
ribonucleoprotein 70 kDa (U1 snRNP 70 kDa) (snRNP70)
(U1-70K) gi|2129740|pir||S71367 U1 snRNP 70K protein -
Arabidopsis thaliana gi|1255711|gb|AAD12773.1| small
nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|1354469|gb|AAD12775.1| U1 snRNP 70K protein
[Arabidopsis thaliana] gi|6561970|emb|CAB62436.1| U1
snRNP 70K protein [Arabidopsis thaliana]
gi|14532500|gb|AAK63978.1| AT3g50670/T3A5_50
[Arabidopsis thaliana] gi|20334806|gb|AAM16264.1|
AT3g50670/T3A5_50 [Arabidopsis thaliana]
Length = 427
Score = 287 bits (734), Expect = 8e-77
Identities = 135/167 (80%), Positives = 150/167 (88%)
Frame = +3
Query: 90 DPLLRNQNAAVQARAKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 269
DP LRN NAAVQARAK QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 270 KCPPLSGMAQFVGKFAEPGDAEYSPPIPVAETPAQRRERVHKLRLEKGAAKAAEELEKYD 449
KCPP +GMAQFV FAEPGD EY+PP P E P+Q+RER+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 450 PQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVTD 590
P NDPN +GDPYKTLFV++L+YE++ES+IKREFESYGPIKRV LVTD
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRVHLVTD 172
>ref|NP_680123.1| U1 small nuclear ribonucleoprotein 70 (U1-70k); protein id:
At3g50670.2 [Arabidopsis thaliana]
gi|1354466|gb|AAD12776.1| U1 snRNP 70K truncated protein
[Arabidopsis thaliana] gi|1354468|gb|AAD12774.1| U1
snRNP 70K truncated protein [Arabidopsis thaliana]
Length = 204
Score = 280 bits (715), Expect = 1e-74
Identities = 131/162 (80%), Positives = 146/162 (89%)
Frame = +3
Query: 90 DPLLRNQNAAVQARAKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKR 269
DP LRN NAAVQARAK QNRANVLQLKL+GQSHPTGLT NLLKLFEPRPPLEYKPPPEKR
Sbjct: 6 DPFLRNPNAAVQARAKVQNRANVLQLKLMGQSHPTGLTNNLLKLFEPRPPLEYKPPPEKR 65
Query: 270 KCPPLSGMAQFVGKFAEPGDAEYSPPIPVAETPAQRRERVHKLRLEKGAAKAAEELEKYD 449
KCPP +GMAQFV FAEPGD EY+PP P E P+Q+RER+HKLRLEKG KAAE+L+KYD
Sbjct: 66 KCPPYTGMAQFVSNFAEPGDPEYAPPKPEVELPSQKRERIHKLRLEKGVEKAAEDLKKYD 125
Query: 450 PQNDPNVSGDPYKTLFVAKLSYETTESRIKREFESYGPIKRV 575
P NDPN +GDPYKTLFV++L+YE++ES+IKREFESYGPIKRV
Sbjct: 126 PNNDPNATGDPYKTLFVSRLNYESSESKIKREFESYGPIKRV 167
>gb|AAK52534.1|AC078891_3 Putative U1 small nuclear ribonucleoprotein [Oryza sativa]
Length = 491
Score = 228 bits (582), Expect = 3e-59
Identities = 105/151 (69%), Positives = 130/151 (85%)
Frame = +3
Query: 120 VQARAKAQNRANVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLSGMAQ 299
+Q+R K Q R NV QLKL+GQ HPTGLT NLLKLFEPRPPL++KPP EKRK P +GMAQ
Sbjct: 18 MQSRTKGQ-RVNVQQLKLMGQGHPTGLTPNLLKLFEPRPPLDFKPPVEKRKLPAYTGMAQ 76
Query: 300 FVGKFAEPGDAEYSPPIPVAETPAQRRERVHKLRLEKGAAKAAEELEKYDPQNDPNVSGD 479
FV +FAEPGD EY+PP+P ET A++++R+ K +L++GAAK AEEL+KYDPQ+DPN +GD
Sbjct: 77 FVSQFAEPGDPEYAPPVPTCETKAEKKDRIRKSKLDQGAAKVAEELQKYDPQSDPNATGD 136
Query: 480 PYKTLFVAKLSYETTESRIKREFESYGPIKR 572
PYKTLFVA+L+YET+E R+KREFE+YGPIKR
Sbjct: 137 PYKTLFVARLNYETSEHRVKREFEAYGPIKR 167
>ref|NP_003080.1| U1 small nuclear ribonucleoprotein 70 kDa; small nuclear
ribonucleoprotein 70kD polypeptide (RNP antigen) [Homo
sapiens] gi|88959|pir||A25707 U1 snRNP 70K protein -
human gi|36100|emb|CAA28352.1| 70 K protein (AA 1-614)
[Homo sapiens]
Length = 614
Score = 122 bits (305), Expect = 4e-27
Identities = 62/134 (46%), Positives = 86/134 (63%), Gaps = 5/134 (3%)
Frame = +3
Query: 198 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLSGMAQFVGKFAEPGDAEYSPPIPVAE 362
L NLL LF PR P+ Y PP EK P G+A ++ +F +P DA PP AE
Sbjct: 182 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDA---PPPTRAE 238
Query: 363 TPAQRRERVHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKR 542
T +R ER + ++E+ + EL+ +DP NDPN GD +KTLFVA+++Y+TTES+++R
Sbjct: 239 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 298
Query: 543 EFESYGPIKRVRLV 584
EFE YGPIKR+ +V
Sbjct: 299 EFEVYGPIKRIHMV 312
>gb|AAA36571.1| ribonucleoprotein antigen gi|26346286|dbj|BAC36794.1| unnamed
protein product [Mus musculus]
gi|29165791|gb|AAH49128.1| Unknown (protein for
MGC:61256) [Mus musculus]
Length = 166
Score = 122 bits (305), Expect = 4e-27
Identities = 62/134 (46%), Positives = 86/134 (63%), Gaps = 5/134 (3%)
Frame = +3
Query: 198 LTANLLKLFEPRPPLEYKPP-----PEKRKCPPLSGMAQFVGKFAEPGDAEYSPPIPVAE 362
L NLL LF PR P+ Y PP EK P G+A ++ +F +P DA PP AE
Sbjct: 5 LPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDA---PPPTRAE 61
Query: 363 TPAQRRERVHKLRLEKGAAKAAEELEKYDPQNDPNVSGDPYKTLFVAKLSYETTESRIKR 542
T +R ER + ++E+ + EL+ +DP NDPN GD +KTLFVA+++Y+TTES+++R
Sbjct: 62 TREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLRR 121
Query: 543 EFESYGPIKRVRLV 584
EFE YGPIKR+ +V
Sbjct: 122 EFEVYGPIKRIHMV 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,072,313
Number of Sequences: 1393205
Number of extensions: 12943563
Number of successful extensions: 62959
Number of sequences better than 10.0: 408
Number of HSP's better than 10.0 without gapping: 54956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61574
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
