Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016598A_C01 KMC016598A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB92346.1| putative casein kinase I [Oryza sativa (japonica... 85 4e-16
gb|AAF19807.1| casein kinase I-like protein [Brassica oleracea] 63 2e-09
ref|NP_177415.1| putative casein kinase I; protein id: At1g72710... 63 2e-09
dbj|BAB90004.1| putative casein kinase [Oryza sativa (japonica c... 53 2e-06
ref|NP_196136.1| cellulose synthase catalytic subunit (gb|AAC393... 33 2.2
>dbj|BAB92346.1| putative casein kinase I [Oryza sativa (japonica cultivar-group)]
Length = 472
Score = 85.1 bits (209), Expect = 4e-16
Identities = 50/100 (50%), Positives = 66/100 (66%), Gaps = 2/100 (2%)
Frame = -2
Query: 484 LLSSSNF-PRTLGSTRRGAVSSRRDAAVFSETMTSHHPLGVDASPAALRKISGAPKGSAI 308
++S+SNF R+ GS+RR AVSS RD +T DASP A R+ SG K S +
Sbjct: 374 VISASNFLGRSSGSSRRPAVSSSRDVMPI-DTSEPSRTRATDASPGAFRRTSGPQKSSPV 432
Query: 307 TSSEHNRTSSGRNTSNIKNLESTLRGIEGLSFN-DERVQY 191
S+E +SS R++SN+KN ES L+GIEGL+F+ DERVQY
Sbjct: 433 NSAEPKHSSSARHSSNVKNYESALKGIEGLNFDGDERVQY 472
>gb|AAF19807.1| casein kinase I-like protein [Brassica oleracea]
Length = 426
Score = 63.2 bits (152), Expect = 2e-09
Identities = 44/95 (46%), Positives = 58/95 (60%), Gaps = 3/95 (3%)
Frame = -2
Query: 487 VLLSSSNFPRTLGSTRRGAVSSRRDAAVFSETMTSHHPLGVDASPAALRKISGAPKGSAI 308
V+LSSS+F R GS+RR AVS R+AAV +P ++A ++ KI G + S I
Sbjct: 333 VMLSSSSFLRATGSSRRAAVSGSREAAVPGTDSEPSNPQIIEAGTSSNPKIHGG-RSSPI 391
Query: 307 TSSEHNRTSSGR--NTSNIKNLESTL-RGIEGLSF 212
SSE+ + SS NTS +KN ES L +GIEGL F
Sbjct: 392 VSSENKKLSSPSRGNTSVMKNYESNLNKGIEGLHF 426
>ref|NP_177415.1| putative casein kinase I; protein id: At1g72710.1, supported by
cDNA: gi_16648960 [Arabidopsis thaliana]
gi|25406203|pir||H96751 probable casein kinase I
F28P22.10 [imported] - Arabidopsis thaliana
gi|12323761|gb|AAG51841.1|AC010926_4 putative casein
kinase I; 37964-34339 [Arabidopsis thaliana]
gi|16648961|gb|AAL24332.1| putative casein kinase I
[Arabidopsis thaliana]
Length = 465
Score = 63.2 bits (152), Expect = 2e-09
Identities = 43/94 (45%), Positives = 55/94 (57%), Gaps = 2/94 (2%)
Frame = -2
Query: 487 VLLSSSNFPRTLGSTRRGAVSSRRDAAVFSETMTSHHPLGVDASPAALRKISGAPKGSAI 308
V+LSSS+F R GS+RR AVSS R+AAV +P V+A + KI + S I
Sbjct: 373 VVLSSSSFLRATGSSRRAAVSSSREAAVLGTDSEPSNPQIVEAGSGSNSKIP-VSRNSPI 431
Query: 307 TSSEHNRTS--SGRNTSNIKNLESTLRGIEGLSF 212
SSE N+ S S TS +KN E+ L+GIE L F
Sbjct: 432 VSSEINKLSSPSRATTSVMKNYEANLKGIESLHF 465
>dbj|BAB90004.1| putative casein kinase [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 52.8 bits (125), Expect = 2e-06
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 4/100 (4%)
Frame = -2
Query: 478 SSSNFPRTLGSTRRGAVSSRRDA-AVFSETMTSHHPLGVDASPAALRKISGAPKGSA--I 308
SS+ R+ GS RR VSS R+ + +E S P DASP ++ S P+ S+ +
Sbjct: 407 SSTMLGRSSGSLRRPVVSSSRELQSSEAEPSRSRTP---DASPGTFQR-SAPPRRSSQML 462
Query: 307 TSSEHNRTSSGRNTSNIKNLESTLRGIEGLSFN-DERVQY 191
S+ +SSGR+ +N KN EST+RGI+GL+F+ ++R+ Y
Sbjct: 463 DYSDPRHSSSGRHAAN-KNYESTIRGIQGLNFDANDRIHY 501
>ref|NP_196136.1| cellulose synthase catalytic subunit (gb|AAC39336.1); protein id:
At5g05170.1, supported by cDNA: gi_2827142 [Arabidopsis
thaliana] gi|9759258|dbj|BAB09693.1| cellulose synthase
catalytic subunit [Arabidopsis thaliana]
gi|26983832|gb|AAN86168.1| putative cellulose synthase
catalytic subunit [Arabidopsis thaliana]
Length = 1065
Score = 32.7 bits (73), Expect = 2.2
Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Frame = -2
Query: 355 PAALRKI-SGAPKGSAITSSEHNRTSSGRNTSN---IKNLESTLRGIEGLSFNDER 200
P+ L K+ G+ K ++ E ++ SGR+T + + NL+ G+EG F+DE+
Sbjct: 639 PSLLSKLCGGSRKKNSKAKKESDKKKSGRHTDSTVPVFNLDDIEEGVEGAGFDDEK 694
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 404,349,178
Number of Sequences: 1393205
Number of extensions: 8249023
Number of successful extensions: 22370
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22362
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
