Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016588A_C01 KMC016588A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK26024.1|AF360314_1 unknown protein [Arabidopsis thaliana] 66 3e-10
ref|NP_568000.1| putative protein; protein id: At4g36290.1, supp... 66 3e-10
gb|AAO22768.1| unknown protein [Arabidopsis thaliana] 63 2e-09
gb|AAK70637.1|AC091238_15 Unknown protein [Oryza sativa] gi|1864... 53 3e-06
pir||T04598 hypothetical protein F23E13.180 - Arabidopsis thalia... 52 7e-06
>gb|AAK26024.1|AF360314_1 unknown protein [Arabidopsis thaliana]
Length = 635
Score = 65.9 bits (159), Expect = 3e-10
Identities = 39/94 (41%), Positives = 56/94 (59%)
Frame = -3
Query: 566 IRQSAGRSTNTQNVHQDDLYIDQTIAGATSTGTPGPVAVDKNKICEENIQLFMKCEEFRK 387
+R G N Q V L AG T G +A + I EEN+QLFM+CEE+ K
Sbjct: 542 LRNYTGLRNNFQPVQ---LNPQPPAAGDTGNNLVGKLAAE---IREENLQLFMRCEEYVK 595
Query: 386 KETELKQTVENLEEDLKDLPRKCRQLSQFLVAKK 285
KE E++QTV++LE++L+++ KC QL+ + AKK
Sbjct: 596 KENEVEQTVKSLEKELEEIKSKCAQLALLVDAKK 629
>ref|NP_568000.1| putative protein; protein id: At4g36290.1, supported by cDNA:
gi_13430803 [Arabidopsis thaliana]
gi|25054923|gb|AAN71939.1| unknown protein [Arabidopsis
thaliana]
Length = 635
Score = 65.9 bits (159), Expect = 3e-10
Identities = 39/94 (41%), Positives = 56/94 (59%)
Frame = -3
Query: 566 IRQSAGRSTNTQNVHQDDLYIDQTIAGATSTGTPGPVAVDKNKICEENIQLFMKCEEFRK 387
+R G N Q V L AG T G +A + I EEN+QLFM+CEE+ K
Sbjct: 542 LRNYTGLRNNFQPVQ---LNPQPPAAGDTGNNLVGKLAAE---IREENLQLFMRCEEYVK 595
Query: 386 KETELKQTVENLEEDLKDLPRKCRQLSQFLVAKK 285
KE E++QTV++LE++L+++ KC QL+ + AKK
Sbjct: 596 KENEVEQTVKSLEKELEEIKSKCAQLALLVDAKK 629
>gb|AAO22768.1| unknown protein [Arabidopsis thaliana]
Length = 626
Score = 63.2 bits (152), Expect = 2e-09
Identities = 38/94 (40%), Positives = 54/94 (57%)
Frame = -3
Query: 566 IRQSAGRSTNTQNVHQDDLYIDQTIAGATSTGTPGPVAVDKNKICEENIQLFMKCEEFRK 387
+R S G +N Q V + Q A T G A +I +EN+QLFMKCEE+ K
Sbjct: 534 LRNSTGLRSNFQPVQLNP----QPTAADTGNNLDGKSA---GEIRQENLQLFMKCEEYIK 586
Query: 386 KETELKQTVENLEEDLKDLPRKCRQLSQFLVAKK 285
KE E +QTV++LE++L++ KC L+ + AKK
Sbjct: 587 KENETEQTVKSLEKELEEFKSKCAHLALLVDAKK 620
>gb|AAK70637.1|AC091238_15 Unknown protein [Oryza sativa] gi|18642703|gb|AAL76195.1|AC092173_7
Hypothetical protein [Oryza sativa]
Length = 629
Score = 52.8 bits (125), Expect = 3e-06
Identities = 28/75 (37%), Positives = 45/75 (59%)
Frame = -3
Query: 506 IDQTIAGATSTGTPGPVAVDKNKICEENIQLFMKCEEFRKKETELKQTVENLEEDLKDLP 327
+D+ S G P ++K + EENI LF + EE R+++T+L+QTV LE+ L +
Sbjct: 548 LDENSVDIGSEGALDPYIMEK--LSEENIGLFTRREELRQRDTQLRQTVGELEQQLAETK 605
Query: 326 RKCRQLSQFLVAKKN 282
+KC QL+ L +K+
Sbjct: 606 KKCAQLADDLRIRKS 620
>pir||T04598 hypothetical protein F23E13.180 - Arabidopsis thaliana
gi|2961388|emb|CAA18135.1| putative protein [Arabidopsis
thaliana] gi|7270582|emb|CAB80300.1| putative protein
[Arabidopsis thaliana]
Length = 563
Score = 51.6 bits (122), Expect = 7e-06
Identities = 39/120 (32%), Positives = 56/120 (46%), Gaps = 26/120 (21%)
Frame = -3
Query: 566 IRQSAGRSTNTQNVHQDDLYIDQTIAGATSTGTPGPVAVDKNKICEENIQLFMKCEEFRK 387
+R G N Q V L AG T G +A + I EEN+QLFM+CEE+ K
Sbjct: 444 LRNYTGLRNNFQPVQ---LNPQPPAAGDTGNNLVGKLAAE---IREENLQLFMRCEEYVK 497
Query: 386 KETELKQT--------------------------VENLEEDLKDLPRKCRQLSQFLVAKK 285
KE E++QT V++LE++L+++ KC QL+ + AKK
Sbjct: 498 KENEVEQTVSLIPQYKTSVYYMDSNTGIHWMIKQVKSLEKELEEIKSKCAQLALLVDAKK 557
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,694,488
Number of Sequences: 1393205
Number of extensions: 10425719
Number of successful extensions: 33120
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 31331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33076
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
