Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016584A_C01 KMC016584A_c01
(517 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199329.1| GTP-binding protein-like; root hair defective 3... 96 3e-19
ref|NP_188003.1| root hair defective 3 (RHD3); protein id: At3g1... 72 5e-12
dbj|BAB90264.1| putative root hair defective 3 (RHD3) [Oryza sat... 68 7e-11
pir||H96754 probable GTP-binding protein [imported] - Arabidopsi... 66 2e-10
ref|NP_177439.1| root hair defective, putative; protein id: At1g... 66 2e-10
>ref|NP_199329.1| GTP-binding protein-like; root hair defective 3 protein-like; protein
id: At5g45160.1 [Arabidopsis thaliana]
gi|9759601|dbj|BAB11389.1| GTP-binding protein-like; root
hair defective 3 protein-like [Arabidopsis thaliana]
Length = 834
Score = 95.5 bits (236), Expect = 3e-19
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 1/106 (0%)
Frame = -2
Query: 516 IQMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAPQGTQPPSSATQIYRN 337
+Q+DI EF+HGA+ G+LSI+SKFLPTVMNLL++LAEEAQG + P SA+Q YR
Sbjct: 725 VQLDIPREFQHGAVAGVLSITSKFLPTVMNLLRKLAEEAQGKTTQE--VPDLSASQTYRQ 782
Query: 336 QVPKPDRVSS-SNSAVSSVSSSGDDSEYSTTNLSHRPRTNVTEVEK 202
Q P S+ S S S++SS+GDD+EYS+ + + R N V++
Sbjct: 783 QSPSHSISSTISESVASNISSAGDDAEYSSPSPALVRRRNTNNVQE 828
>ref|NP_188003.1| root hair defective 3 (RHD3); protein id: At3g13870.1, supported by
cDNA: gi_20260177 [Arabidopsis thaliana]
gi|1839188|gb|AAB58375.1| root hair defective 3
[Arabidopsis thaliana] gi|20260178|gb|AAM12987.1|
unknown protein [Arabidopsis thaliana]
gi|22136246|gb|AAM91201.1| unknown protein [Arabidopsis
thaliana]
Length = 802
Score = 71.6 bits (174), Expect = 5e-12
Identities = 42/100 (42%), Positives = 64/100 (64%)
Frame = -2
Query: 516 IQMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAPQGTQPPSSATQIYRN 337
+Q++I+GEF++G LPGLLS+S+KF+PTVMNLLK+LAEE Q PP+++ Q
Sbjct: 719 VQLNISGEFQNGVLPGLLSLSTKFIPTVMNLLKKLAEEGQA--------PPTNSNQ---- 766
Query: 336 QVPKPDRVSSSNSAVSSVSSSGDDSEYSTTNLSHRPRTNV 217
S +++A S V+++G+ S S++ S P NV
Sbjct: 767 --------SMNSTAQSEVTTNGESSSSSSSGSS--PAKNV 796
>dbj|BAB90264.1| putative root hair defective 3 (RHD3) [Oryza sativa (japonica
cultivar-group)]
Length = 806
Score = 67.8 bits (164), Expect = 7e-11
Identities = 39/89 (43%), Positives = 58/89 (64%)
Frame = -2
Query: 516 IQMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAPQGTQPPSSATQIYRN 337
+Q+DIA EF++G LP +LS+S+KF+PT+MN+LKRLA+E Q AP+ + + RN
Sbjct: 718 VQLDIAKEFQNGFLPAVLSLSTKFVPTIMNILKRLADEGQRPAAPERQREMELQPKSTRN 777
Query: 336 QVPKPDRVSSSNSAVSSVSSSGDDSEYST 250
V+S+ S SS++SS EYS+
Sbjct: 778 --GSHSNVTSAGS--SSITSSESGPEYSS 802
>pir||H96754 probable GTP-binding protein [imported] - Arabidopsis thaliana
gi|5903085|gb|AAD55643.1|AC008017_16 Putative
GTP-binding protein [Arabidopsis thaliana]
Length = 713
Score = 66.2 bits (160), Expect = 2e-10
Identities = 39/83 (46%), Positives = 52/83 (61%)
Frame = -2
Query: 513 QMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAPQGTQPPSSATQIYRNQ 334
Q+DI GEFR+GALPGL+SIS+KF+PTVMNL+K L A QG PP++ + R+
Sbjct: 643 QLDIPGEFRNGALPGLISISAKFVPTVMNLIKNL--------AAQGEDPPAANPENRRSS 694
Query: 333 VPKPDRVSSSNSAVSSVSSSGDD 265
+ SSS + SSS +D
Sbjct: 695 ----NNTSSSENPPDHKSSSKED 713
>ref|NP_177439.1| root hair defective, putative; protein id: At1g72960.1 [Arabidopsis
thaliana]
Length = 748
Score = 66.2 bits (160), Expect = 2e-10
Identities = 39/83 (46%), Positives = 52/83 (61%)
Frame = -2
Query: 513 QMDIAGEFRHGALPGLLSISSKFLPTVMNLLKRLAEEAQGNPAPQGTQPPSSATQIYRNQ 334
Q+DI GEFR+GALPGL+SIS+KF+PTVMNL+K L A QG PP++ + R+
Sbjct: 678 QLDIPGEFRNGALPGLISISAKFVPTVMNLIKNL--------AAQGEDPPAANPENRRSS 729
Query: 333 VPKPDRVSSSNSAVSSVSSSGDD 265
+ SSS + SSS +D
Sbjct: 730 ----NNTSSSENPPDHKSSSKED 748
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,670,488
Number of Sequences: 1393205
Number of extensions: 8137941
Number of successful extensions: 31444
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 25473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29122
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
