Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016578A_C01 KMC016578A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09870 probable endo-xyloglucan transferase - upland cotton... 176 1e-43
gb|AAD39086.1|AF093507_1 xyloglucan endo-transglycosylase-like p... 175 3e-43
ref|NP_569019.1| xyloglucan endotransglycosylase, putative; prot... 170 1e-41
gb|AAM61529.1| xyloglucan endo-transglycosylase-like protein [Ar... 170 1e-41
pir||T05895 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) F6... 170 1e-41
>pir||T09870 probable endo-xyloglucan transferase - upland cotton (fragment)
gi|2244732|dbj|BAA21107.1| endo-xyloglucan transferase
[Gossypium hirsutum]
Length = 279
Score = 176 bits (447), Expect = 1e-43
Identities = 81/127 (63%), Positives = 96/127 (74%), Gaps = 6/127 (4%)
Frame = -3
Query: 541 FYVDDVPIRVYKNNEENGIPYPSKQPMGVYCTLWAAG-WATRGGLEKIDWSKAPFIAYYK 365
FY+D+VPIRVYKNNE IPYP QPMGVY TLW A WATRGGLEKIDW+KAPF+AYYK
Sbjct: 151 FYIDEVPIRVYKNNEARNIPYPKLQPMGVYSTLWEADDWATRGGLEKIDWTKAPFLAYYK 210
Query: 364 DFYIEGCPLPGGPENCTTNPI-----IGYRDIPSFDIRRYKWARQNYMIYDYCQDKARNS 200
DF IEGCP+P GP NC TN Y+ + + + +RY+W R N++IYDYC DK+R
Sbjct: 211 DFDIEGCPVP-GPVNCATNSRNWWEGTAYQALNAMEAKRYRWVRMNHVIYDYCTDKSRYP 269
Query: 199 VTPPECV 179
VTPPEC+
Sbjct: 270 VTPPECM 276
>gb|AAD39086.1|AF093507_1 xyloglucan endo-transglycosylase-like protein [Medicago truncatula]
Length = 276
Score = 175 bits (444), Expect = 3e-43
Identities = 81/130 (62%), Positives = 98/130 (75%), Gaps = 6/130 (4%)
Frame = -3
Query: 541 FYVDDVPIRVYKNNEENGIPYPSKQPMGVYCTLWAA-GWATRGGLEKIDWSKAPFIAYYK 365
FYVD+VPIRVYKNNE GIPYP Q MGV+ TLW A WATRGGLEKI+WSKAPF AYYK
Sbjct: 148 FYVDEVPIRVYKNNEAKGIPYPKMQAMGVFSTLWEADNWATRGGLEKINWSKAPFYAYYK 207
Query: 364 DFYIEGCPLPGGPENCTTNPI-----IGYRDIPSFDIRRYKWARQNYMIYDYCQDKARNS 200
DF IEGC +P GP C+TNP + Y+ + + + RRY+W R N++IYDYCQDK+R
Sbjct: 208 DFDIEGCAIP-GPTTCSTNPKNWWEGVEYQALSAIEARRYRWVRMNHVIYDYCQDKSRYP 266
Query: 199 VTPPECVDGL 170
+TP EC+ G+
Sbjct: 267 MTPHECLSGI 276
>ref|NP_569019.1| xyloglucan endotransglycosylase, putative; protein id: At5g65730.1,
supported by cDNA: 12301., supported by cDNA:
gi_15982912, supported by cDNA: gi_20334765 [Arabidopsis
thaliana] gi|15982913|gb|AAL09803.1| AT5g65730/MPA24_8
[Arabidopsis thaliana] gi|20334766|gb|AAM16244.1|
AT5g65730/MPA24_8 [Arabidopsis thaliana]
Length = 292
Score = 170 bits (430), Expect = 1e-41
Identities = 80/126 (63%), Positives = 92/126 (72%), Gaps = 6/126 (4%)
Frame = -3
Query: 541 FYVDDVPIRVYKNNEENGIPYPSKQPMGVYCTLWAAG-WATRGGLEKIDWSKAPFIAYYK 365
FYVDDVPIR YKNNE I YP+ QPMGVY TLW A WATRGGLEKIDWSKAPF AYYK
Sbjct: 166 FYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYK 225
Query: 364 DFYIEGCPLPGGPENCTTNPI-----IGYRDIPSFDIRRYKWARQNYMIYDYCQDKARNS 200
DF IEGCP+P GP C +NP Y+ + + + RRY+W R N+M+YDYC D++R
Sbjct: 226 DFDIEGCPVP-GPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFP 284
Query: 199 VTPPEC 182
V PPEC
Sbjct: 285 VPPPEC 290
>gb|AAM61529.1| xyloglucan endo-transglycosylase-like protein [Arabidopsis
thaliana]
Length = 292
Score = 170 bits (430), Expect = 1e-41
Identities = 80/126 (63%), Positives = 92/126 (72%), Gaps = 6/126 (4%)
Frame = -3
Query: 541 FYVDDVPIRVYKNNEENGIPYPSKQPMGVYCTLWAAG-WATRGGLEKIDWSKAPFIAYYK 365
FYVDDVPIR YKNNE I YP+ QPMGVY TLW A WATRGGLEKIDWSKAPF AYYK
Sbjct: 166 FYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYK 225
Query: 364 DFYIEGCPLPGGPENCTTNPI-----IGYRDIPSFDIRRYKWARQNYMIYDYCQDKARNS 200
DF IEGCP+P GP C +NP Y+ + + + RRY+W R N+M+YDYC D++R
Sbjct: 226 DFDIEGCPVP-GPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFP 284
Query: 199 VTPPEC 182
V PPEC
Sbjct: 285 VPPPEC 290
>pir||T05895 xyloglucan endo-1,4-beta-D-glucanase (EC 3.2.1.-) F6H11.140 -
Arabidopsis thaliana gi|2827712|emb|CAA16685.1|
endoxyloglucan tranferase-like protein [Arabidopsis
thaliana] gi|10177331|dbj|BAB10680.1| xyloglucan
endo-transglycosylase-like protein [Arabidopsis
thaliana] gi|14994271|gb|AAK73270.1| xyloglucan
endo-transglycosylase-like protein [Arabidopsis
thaliana]
Length = 269
Score = 170 bits (430), Expect = 1e-41
Identities = 80/126 (63%), Positives = 92/126 (72%), Gaps = 6/126 (4%)
Frame = -3
Query: 541 FYVDDVPIRVYKNNEENGIPYPSKQPMGVYCTLWAAG-WATRGGLEKIDWSKAPFIAYYK 365
FYVDDVPIR YKNNE I YP+ QPMGVY TLW A WATRGGLEKIDWSKAPF AYYK
Sbjct: 143 FYVDDVPIREYKNNEAKNIAYPTSQPMGVYSTLWEADDWATRGGLEKIDWSKAPFYAYYK 202
Query: 364 DFYIEGCPLPGGPENCTTNPI-----IGYRDIPSFDIRRYKWARQNYMIYDYCQDKARNS 200
DF IEGCP+P GP C +NP Y+ + + + RRY+W R N+M+YDYC D++R
Sbjct: 203 DFDIEGCPVP-GPTFCPSNPHNWWEGYAYQSLNAVEARRYRWVRVNHMVYDYCTDRSRFP 261
Query: 199 VTPPEC 182
V PPEC
Sbjct: 262 VPPPEC 267
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,633,432
Number of Sequences: 1393205
Number of extensions: 12482521
Number of successful extensions: 31129
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 29610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30884
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
