Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016575A_C01 KMC016575A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564425.1| expressed protein; protein id: At1g33490.1, sup... 153 1e-36
ref|NP_567353.1| expressed protein; protein id: At4g10140.1, sup... 147 8e-35
gb|AAL85987.1| unknown protein [Arabidopsis thaliana] 147 8e-35
ref|NP_714849.1| conserved hypothetical protein [Leptospira inte... 48 9e-05
emb|CAA46592.1| gp120 and gp41 [Human immunodeficiency virus 1] 32 3.8
>ref|NP_564425.1| expressed protein; protein id: At1g33490.1, supported by cDNA:
92215. [Arabidopsis thaliana] gi|25403195|pir||G86458
unknown protein, 76034-74699 [imported] - Arabidopsis
thaliana gi|12322387|gb|AAG51219.1|AC051630_16 unknown
protein; 76034-74699 [Arabidopsis thaliana]
gi|26450368|dbj|BAC42300.1| unknown protein [Arabidopsis
thaliana]
Length = 175
Score = 153 bits (387), Expect = 1e-36
Identities = 73/98 (74%), Positives = 86/98 (87%)
Frame = -3
Query: 543 VMLANFVATPIELSLVVPFLRFGEVISGGPHFPLTSDALKKVFTGQASREVLLSVAHALL 364
VMLANF+ATPIELSLVVPFLR GE I+GGPHFPLTSDALKKVFTGQASR+V LS+ +ALL
Sbjct: 72 VMLANFIATPIELSLVVPFLRLGEKITGGPHFPLTSDALKKVFTGQASRDVFLSIGNALL 131
Query: 363 GWLVASPFILGTLYIVLLPCFKFLVQKFSTVPLSPKKP 250
GWL+A+PF++ LYI+ LPCFK LV+KFS+V + K P
Sbjct: 132 GWLIAAPFVIVALYIMFLPCFKILVRKFSSVDSTAKTP 169
>ref|NP_567353.1| expressed protein; protein id: At4g10140.1, supported by cDNA:
28203. [Arabidopsis thaliana] gi|7486313|pir||T04064
hypothetical protein F28M11.60 - Arabidopsis thaliana
gi|4538978|emb|CAB39766.1| hypothetical protein
[Arabidopsis thaliana] gi|7267710|emb|CAB78137.1|
hypothetical protein [Arabidopsis thaliana]
gi|21555511|gb|AAM63876.1| unknown [Arabidopsis
thaliana]
Length = 183
Score = 147 bits (371), Expect = 8e-35
Identities = 74/112 (66%), Positives = 89/112 (79%)
Frame = -3
Query: 543 VMLANFVATPIELSLVVPFLRFGEVISGGPHFPLTSDALKKVFTGQASREVLLSVAHALL 364
VMLAN +ATP+EL+LVVPFLR GE ++GGPHFPLTSDALKKVFTGQAS+EV LS+ +ALL
Sbjct: 72 VMLANIIATPVELALVVPFLRLGEKVTGGPHFPLTSDALKKVFTGQASQEVFLSIGNALL 131
Query: 363 GWLVASPFILGTLYIVLLPCFKFLVQKFSTVPLSPKKPLLHPHSEISLKVRD 208
GWLVA+PF TLY+VLLPCF LV+KF V + K P +E++ K RD
Sbjct: 132 GWLVATPFFFITLYVVLLPCFTILVRKFGGVASTQKLP-TSMETELNPKPRD 182
>gb|AAL85987.1| unknown protein [Arabidopsis thaliana]
Length = 143
Score = 147 bits (371), Expect = 8e-35
Identities = 74/112 (66%), Positives = 89/112 (79%)
Frame = -3
Query: 543 VMLANFVATPIELSLVVPFLRFGEVISGGPHFPLTSDALKKVFTGQASREVLLSVAHALL 364
VMLAN +ATP+EL+LVVPFLR GE ++GGPHFPLTSDALKKVFTGQAS+EV LS+ +ALL
Sbjct: 32 VMLANIIATPVELALVVPFLRLGEKVTGGPHFPLTSDALKKVFTGQASQEVFLSIGNALL 91
Query: 363 GWLVASPFILGTLYIVLLPCFKFLVQKFSTVPLSPKKPLLHPHSEISLKVRD 208
GWLVA+PF TLY+VLLPCF LV+KF V + K P +E++ K RD
Sbjct: 92 GWLVATPFFFITLYVVLLPCFTILVRKFGGVASTQKLP-TSMETELNPKPRD 142
>ref|NP_714849.1| conserved hypothetical protein [Leptospira interrogans serovar lai
str. 56601] gi|24202444|gb|AAN51864.1|AE011617_9
conserved hypothetical protein [Leptospira interrogans
serovar lai str. 56601]
Length = 164
Score = 47.8 bits (112), Expect = 9e-05
Identities = 24/88 (27%), Positives = 46/88 (52%)
Frame = -3
Query: 543 VMLANFVATPIELSLVVPFLRFGEVISGGPHFPLTSDALKKVFTGQASREVLLSVAHALL 364
+ LAN++ P+++ L+ PFL+ G +++ P ++ + ++ + A A+L
Sbjct: 71 IQLANYIVYPLQIILIFPFLKTGSIVTSTPLDLSWAERISLDNVSVIAKGIFDVAAFAVL 130
Query: 363 GWLVASPFILGTLYIVLLPCFKFLVQKF 280
GWL+ P LY +LLP K + + F
Sbjct: 131 GWLIWVPSASIVLYFLLLPFLKKISKLF 158
>emb|CAA46592.1| gp120 and gp41 [Human immunodeficiency virus 1]
Length = 601
Score = 32.3 bits (72), Expect = 3.8
Identities = 14/39 (35%), Positives = 20/39 (50%)
Frame = -2
Query: 376 PCVIRVAGCITFYFGNSVHSTITMLQIFGSEILNCSFKS 260
PCV C+T + N+ +S T + EI NCSF +
Sbjct: 9 PCVKLTPLCVTLHCTNATYSNSTYNSTYNEEIKNCSFNT 47
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,721,450
Number of Sequences: 1393205
Number of extensions: 8284583
Number of successful extensions: 20780
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 20375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20778
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
