Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016555A_C01 KMC016555A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61277.1| protein phosphatase 2C-like [Arabidopsis thaliana] 78 8e-14
ref|NP_568174.1| protein phosphatase 2C-like; protein id: At5g06... 78 8e-14
dbj|BAB09809.1| protein phosphatase 2C-like [Arabidopsis thaliana] 78 8e-14
dbj|BAB02253.1| protein phosphatase 2C [Arabidopsis thaliana] gi... 58 6e-08
ref|NP_187868.1| protein phosphatase 2C, putative; protein id: A... 58 6e-08
>gb|AAM61277.1| protein phosphatase 2C-like [Arabidopsis thaliana]
Length = 393
Score = 77.8 bits (190), Expect = 8e-14
Identities = 36/64 (56%), Positives = 49/64 (76%)
Frame = -1
Query: 547 RKGKRTYKELQKVKKGMRRCFHDDITVIVVFIDHELLGKRNVPVPQVSIKGFIDTVGPSQ 368
+K + Y +L+KV++G+RR FHDDITV+V+FID+ELL VP++SIKGF TVGPS+
Sbjct: 328 KKREMNYDDLKKVERGVRRFFHDDITVVVIFIDNELLMVEKATVPELSIKGFSHTVGPSK 387
Query: 367 FRSF 356
F F
Sbjct: 388 FSIF 391
>ref|NP_568174.1| protein phosphatase 2C-like; protein id: At5g06750.1, supported by
cDNA: 115504. [Arabidopsis thaliana]
gi|28393554|gb|AAO42197.1| putative protein phosphatase
2C [Arabidopsis thaliana] gi|28973115|gb|AAO63882.1|
putative protein phosphatase 2C [Arabidopsis thaliana]
Length = 393
Score = 77.8 bits (190), Expect = 8e-14
Identities = 36/64 (56%), Positives = 49/64 (76%)
Frame = -1
Query: 547 RKGKRTYKELQKVKKGMRRCFHDDITVIVVFIDHELLGKRNVPVPQVSIKGFIDTVGPSQ 368
+K + Y +L+KV++G+RR FHDDITV+V+FID+ELL VP++SIKGF TVGPS+
Sbjct: 328 KKREMNYDDLKKVERGVRRFFHDDITVVVIFIDNELLMVEKATVPELSIKGFSHTVGPSK 387
Query: 367 FRSF 356
F F
Sbjct: 388 FSIF 391
>dbj|BAB09809.1| protein phosphatase 2C-like [Arabidopsis thaliana]
Length = 386
Score = 77.8 bits (190), Expect = 8e-14
Identities = 36/64 (56%), Positives = 49/64 (76%)
Frame = -1
Query: 547 RKGKRTYKELQKVKKGMRRCFHDDITVIVVFIDHELLGKRNVPVPQVSIKGFIDTVGPSQ 368
+K + Y +L+KV++G+RR FHDDITV+V+FID+ELL VP++SIKGF TVGPS+
Sbjct: 321 KKREMNYDDLKKVERGVRRFFHDDITVVVIFIDNELLMVEKATVPELSIKGFSHTVGPSK 380
Query: 367 FRSF 356
F F
Sbjct: 381 FSIF 384
>dbj|BAB02253.1| protein phosphatase 2C [Arabidopsis thaliana]
gi|28466963|gb|AAO44090.1| At3g12620 [Arabidopsis
thaliana]
Length = 385
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/59 (47%), Positives = 39/59 (65%)
Frame = -1
Query: 547 RKGKRTYKELQKVKKGMRRCFHDDITVIVVFIDHELLGKRNVPVPQVSIKGFIDTVGPS 371
+K + Y +L+K+ +G+RR FHDDITVIVVF+D L+ + P +SI G D GPS
Sbjct: 326 KKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTSRRPLLSISGGGDLAGPS 384
>ref|NP_187868.1| protein phosphatase 2C, putative; protein id: At3g12620.1
[Arabidopsis thaliana]
gi|12321955|gb|AAG51012.1|AC069474_11 protein
phosphatase 2C, putative; 16828-18284 [Arabidopsis
thaliana]
Length = 376
Score = 58.2 bits (139), Expect = 6e-08
Identities = 28/59 (47%), Positives = 39/59 (65%)
Frame = -1
Query: 547 RKGKRTYKELQKVKKGMRRCFHDDITVIVVFIDHELLGKRNVPVPQVSIKGFIDTVGPS 371
+K + Y +L+K+ +G+RR FHDDITVIVVF+D L+ + P +SI G D GPS
Sbjct: 317 KKREMRYSDLKKIDRGVRRHFHDDITVIVVFLDSHLVSRSTSRRPLLSISGGGDLAGPS 375
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,683,241
Number of Sequences: 1393205
Number of extensions: 9231378
Number of successful extensions: 17886
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 17343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17885
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
