Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016554A_C01 KMC016554A_c01
(554 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC15746.1| B1 type cyclin [Daucus carota] 178 4e-44
pir||S49904 cyclin - common tobacco 166 2e-40
emb|CAB81558.1| cyclin B1 [Nicotiana tabacum] 166 2e-40
gb|AAC24244.1| cyclin [Lupinus luteus] gi|4884724|gb|AAD31788.1|... 165 4e-40
emb|CAB46644.1| cyclin B1 [Lycopersicon esculentum] 164 9e-40
>dbj|BAC15746.1| B1 type cyclin [Daucus carota]
Length = 432
Score = 178 bits (451), Expect = 4e-44
Identities = 88/151 (58%), Positives = 113/151 (74%), Gaps = 2/151 (1%)
Frame = -1
Query: 554 ISNDAYTKHQIHSMERSILEKLQWYLTVPTPYVFLVRL--SSVQPDKQMENLAFFLAELT 381
IS++AY + Q+ ME+SIL KL+WYLTVPTPYVFLVR SSV D +MEN+ FFLAEL
Sbjct: 282 ISDNAYNREQVLLMEKSILAKLEWYLTVPTPYVFLVRYIKSSVPSDPEMENMTFFLAELG 341
Query: 380 LEHYQAIVSYSPSTIAASAIYAARCTLNRRPFWSETLKRLSSYCTEQIIECAKLLVSLQT 201
L HY +++Y PS IAASA+YAARCTL + PFW+ETLK + Y +Q+ +CAKLLVS
Sbjct: 342 LTHYTTVMTYCPSVIAASAVYAARCTLKKSPFWTETLKHYTGYSEDQLRDCAKLLVSYHA 401
Query: 200 SAADSKPNALYWKFSSEDKGFVALLPPTKNI 108
+ ++SK A+Y KF+ +KG VAL+PP K I
Sbjct: 402 ALSESKLKAVYKKFARPEKGVVALVPPLKLI 432
>pir||S49904 cyclin - common tobacco
Length = 449
Score = 166 bits (420), Expect = 2e-40
Identities = 80/152 (52%), Positives = 112/152 (73%), Gaps = 3/152 (1%)
Frame = -1
Query: 554 ISNDAYTKHQIHSMERSILEKLQWYLTVPTPYVFLVRL---SSVQPDKQMENLAFFLAEL 384
IS++AY + QI ME++IL KL+WYLTVPTPYVFLVR ++ +++MEN+ FF AEL
Sbjct: 261 ISDNAYAREQILQMEKAILGKLEWYLTVPTPYVFLVRYIKAATPSDNQEMENMTFFFAEL 320
Query: 383 TLEHYQAIVSYSPSTIAASAIYAARCTLNRRPFWSETLKRLSSYCTEQIIECAKLLVSLQ 204
L +Y+ +SY PS +AAS++YAAR TLN+ P W++TL+ + Y +Q++ECAK+LVS
Sbjct: 321 GLMNYKITISYRPSMLAASSVYAARSTLNKTPLWTQTLQHHTGYSEDQLMECAKILVSYH 380
Query: 203 TSAADSKPNALYWKFSSEDKGFVALLPPTKNI 108
AA+SK A+Y KFSS D+G VA PP +N+
Sbjct: 381 LDAAESKLKAIYRKFSSPDRGAVAFFPPARNL 412
>emb|CAB81558.1| cyclin B1 [Nicotiana tabacum]
Length = 425
Score = 166 bits (420), Expect = 2e-40
Identities = 80/152 (52%), Positives = 112/152 (73%), Gaps = 3/152 (1%)
Frame = -1
Query: 554 ISNDAYTKHQIHSMERSILEKLQWYLTVPTPYVFLVRL---SSVQPDKQMENLAFFLAEL 384
IS++AY + QI ME++IL KL+WYLTVPTPYVFLVR ++ +++MEN+ FF AEL
Sbjct: 261 ISDNAYAREQILQMEKAILGKLEWYLTVPTPYVFLVRYIKAATPSDNQEMENMTFFFAEL 320
Query: 383 TLEHYQAIVSYSPSTIAASAIYAARCTLNRRPFWSETLKRLSSYCTEQIIECAKLLVSLQ 204
L +Y+ +SY PS +AAS++YAAR TLN+ P W++TL+ + Y +Q++ECAK+LVS
Sbjct: 321 GLMNYKITISYRPSMLAASSVYAARSTLNKTPLWTQTLQHHTGYSEDQLMECAKILVSYH 380
Query: 203 TSAADSKPNALYWKFSSEDKGFVALLPPTKNI 108
AA+SK A+Y KFSS D+G VA PP +N+
Sbjct: 381 LDAAESKLKAIYRKFSSPDRGAVAFFPPARNL 412
>gb|AAC24244.1| cyclin [Lupinus luteus] gi|4884724|gb|AAD31788.1|AF126105_1 mitotic
cyclin B1-1 [Lupinus luteus]
Length = 431
Score = 165 bits (417), Expect = 4e-40
Identities = 83/151 (54%), Positives = 112/151 (73%), Gaps = 2/151 (1%)
Frame = -1
Query: 554 ISNDAYTKHQIHSMERSILEKLQWYLTVPTPYVFLVRL--SSVQPDKQMENLAFFLAELT 381
IS++AY + I ME++IL KL+WYLTVPT YVFLVR +S DK++E++ FFLAEL+
Sbjct: 279 ISDNAYVRENILIMEKTILSKLEWYLTVPTTYVFLVRYIKASTPYDKKIEDMIFFLAELS 338
Query: 380 LEHYQAIVSYSPSTIAASAIYAARCTLNRRPFWSETLKRLSSYCTEQIIECAKLLVSLQT 201
L Y ++SY PS IAASA+YAARC L R P+W+ETLK + Y EQ+ +CAKL+V+ +
Sbjct: 339 LMDYPLVISYCPSMIAASAVYAARCILGRVPYWTETLKHYTGYYEEQLRDCAKLMVNFHS 398
Query: 200 SAADSKPNALYWKFSSEDKGFVALLPPTKNI 108
A +SK A+Y KFSS ++G VAL+ PTKN+
Sbjct: 399 VAPESKLRAVYKKFSSLERGAVALVAPTKNL 429
>emb|CAB46644.1| cyclin B1 [Lycopersicon esculentum]
Length = 375
Score = 164 bits (414), Expect = 9e-40
Identities = 85/151 (56%), Positives = 111/151 (73%), Gaps = 2/151 (1%)
Frame = -1
Query: 554 ISNDAYTKHQIHSMERSILEKLQWYLTVPTPYVFLVRL--SSVQPDKQMENLAFFLAELT 381
I+++AY + QI ME+ IL KL+WYLTVPTPYVFLVR ++V D++MEN+ FFLAEL
Sbjct: 220 ITDNAYVRDQILLMEKVILGKLEWYLTVPTPYVFLVRYIKAAVPSDQEMENMTFFLAELG 279
Query: 380 LEHYQAIVSYSPSTIAASAIYAARCTLNRRPFWSETLKRLSSYCTEQIIECAKLLVSLQT 201
L +Y ++SY PS IAASA YAAR TLNR P W++TLK + Y +Q+ ECAK LVS
Sbjct: 280 LMNYTTVISYCPSKIAASAGYAARSTLNRSPRWTDTLKHHTGYTEDQLRECAKQLVSFHF 339
Query: 200 SAADSKPNALYWKFSSEDKGFVALLPPTKNI 108
AA++K A+Y KFSS D+ VALLPP +++
Sbjct: 340 GAAENKLKAVYRKFSSPDRCAVALLPPARDV 370
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,064,688
Number of Sequences: 1393205
Number of extensions: 7902328
Number of successful extensions: 20408
Number of sequences better than 10.0: 379
Number of HSP's better than 10.0 without gapping: 19810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20178
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
