Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016545A_C01 KMC016545A_c01
(667 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195766.1| putative protein; protein id: At5g01460.1, supp... 137 1e-31
gb|AAK59596.1| unknown protein [Arabidopsis thaliana] gi|2441736... 134 1e-30
ref|NP_566338.1| expressed protein; protein id: At3g08930.1, sup... 134 1e-30
dbj|BAC24841.1| OSJNBa0038F22.20 [Oryza sativa (japonica cultiva... 125 7e-28
gb|AAF07832.1|AC010871_8 unknown protein [Arabidopsis thaliana] 111 8e-24
>ref|NP_195766.1| putative protein; protein id: At5g01460.1, supported by cDNA:
gi_18176295, supported by cDNA: gi_20465352 [Arabidopsis
thaliana] gi|11281130|pir||T48168 hypothetical protein
T10O8.170 - Arabidopsis thaliana
gi|7320724|emb|CAB81929.1| putative protein [Arabidopsis
thaliana] gi|18176296|gb|AAL60018.1| unknown protein
[Arabidopsis thaliana] gi|20465353|gb|AAM20080.1|
unknown protein [Arabidopsis thaliana]
Length = 509
Score = 137 bits (345), Expect = 1e-31
Identities = 64/72 (88%), Positives = 68/72 (93%)
Frame = -2
Query: 666 VIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFG 487
VIQFC+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FVVLAGLTF+YY AFG
Sbjct: 436 VIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVVLAGLTFLYYIAFG 495
Query: 486 WRRKKPSGRFPI 451
WRRKKPSGRF +
Sbjct: 496 WRRKKPSGRFQL 507
>gb|AAK59596.1| unknown protein [Arabidopsis thaliana] gi|24417362|gb|AAN60291.1|
unknown [Arabidopsis thaliana]
Length = 509
Score = 134 bits (336), Expect = 1e-30
Identities = 62/72 (86%), Positives = 67/72 (92%)
Frame = -2
Query: 666 VIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFG 487
VIQFC+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AFG
Sbjct: 436 VIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAFG 495
Query: 486 WRRKKPSGRFPI 451
WRRKK SGRF +
Sbjct: 496 WRRKKTSGRFQL 507
>ref|NP_566338.1| expressed protein; protein id: At3g08930.1, supported by cDNA:
gi_14334835 [Arabidopsis thaliana]
Length = 310
Score = 134 bits (336), Expect = 1e-30
Identities = 62/72 (86%), Positives = 67/72 (92%)
Frame = -2
Query: 666 VIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFG 487
VIQFC+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AFG
Sbjct: 237 VIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAFG 296
Query: 486 WRRKKPSGRFPI 451
WRRKK SGRF +
Sbjct: 297 WRRKKTSGRFQL 308
>dbj|BAC24841.1| OSJNBa0038F22.20 [Oryza sativa (japonica cultivar-group)]
Length = 507
Score = 125 bits (313), Expect = 7e-28
Identities = 58/72 (80%), Positives = 64/72 (88%)
Frame = -2
Query: 666 VIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAFG 487
VIQFC+TAFAYYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQ FV LA LT YYA FG
Sbjct: 434 VIQFCATAFAYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQYGFVALAILTLFYYAIFG 493
Query: 486 WRRKKPSGRFPI 451
WR++KP+GRF +
Sbjct: 494 WRKRKPTGRFQL 505
>gb|AAF07832.1|AC010871_8 unknown protein [Arabidopsis thaliana]
Length = 482
Score = 111 bits (278), Expect = 8e-24
Identities = 52/59 (88%), Positives = 56/59 (94%)
Frame = -2
Query: 666 VIQFCSTAFAYYAQATAAQEIFGHTLESLRGIKYLYKYNVFQIAFVVLAGLTFVYYAAF 490
VIQFC+TAF YYAQATAAQEIFGHTL+SLRGIKYLYKYNVFQI FV+LAGLTF+YY AF
Sbjct: 420 VIQFCATAFGYYAQATAAQEIFGHTLQSLRGIKYLYKYNVFQIGFVILAGLTFLYYIAF 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,013,465
Number of Sequences: 1393205
Number of extensions: 12820247
Number of successful extensions: 31828
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 30610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31808
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
