Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016541A_C01 KMC016541A_c01
(478 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB09300.1| contains similarity to actin~gene_id:MDA7.24 [Ar... 116 1e-25
ref|NP_568836.1| putative protein; protein id: At5g56180.1 [Arab... 116 1e-25
gb|AAC16056.1| actin [Spirogyra sp. SVCK-253] 62 2e-09
sp|Q9Y702|ACT1_SCHCO Actin 1 (Beta-actin) gi|4887630|dbj|BAA7781... 60 1e-08
ref|NP_181740.1| hypothetical protein; protein id: At2g42100.1 [... 60 2e-08
>dbj|BAB09300.1| contains similarity to actin~gene_id:MDA7.24 [Arabidopsis thaliana]
gi|21427471|gb|AAM53248.1|AF507916_2 actin-related
protein 8B [Arabidopsis thaliana]
gi|21489926|tpg|DAA00031.1| TPA: actin-related protein
8B; AtARP8B [Arabidopsis thaliana]
Length = 471
Score = 116 bits (290), Expect = 1e-25
Identities = 51/77 (66%), Positives = 63/77 (81%)
Frame = -1
Query: 478 KTVVLSGGTACLTGLAERIDKELNALLPPYMSNGIRVVPPPYGADTPWFGAKIIGNLSTF 299
KTVVL+GG+ACL GL+ER+++EL LP +SNGIRV+PPPYG DT W GAK+I NLS F
Sbjct: 393 KTVVLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIF 452
Query: 298 PGPWCVEKKLFRQKPRL 248
PGPWC+ +K FR+K RL
Sbjct: 453 PGPWCITRKQFRRKSRL 469
>ref|NP_568836.1| putative protein; protein id: At5g56180.1 [Arabidopsis thaliana]
Length = 285
Score = 116 bits (290), Expect = 1e-25
Identities = 51/77 (66%), Positives = 63/77 (81%)
Frame = -1
Query: 478 KTVVLSGGTACLTGLAERIDKELNALLPPYMSNGIRVVPPPYGADTPWFGAKIIGNLSTF 299
KTVVL+GG+ACL GL+ER+++EL LP +SNGIRV+PPPYG DT W GAK+I NLS F
Sbjct: 207 KTVVLTGGSACLPGLSERLERELQDHLPSSISNGIRVIPPPYGVDTSWHGAKLISNLSIF 266
Query: 298 PGPWCVEKKLFRQKPRL 248
PGPWC+ +K FR+K RL
Sbjct: 267 PGPWCITRKQFRRKSRL 283
>gb|AAC16056.1| actin [Spirogyra sp. SVCK-253]
Length = 364
Score = 62.4 bits (150), Expect = 2e-09
Identities = 32/75 (42%), Positives = 44/75 (58%)
Frame = -1
Query: 472 VVLSGGTACLTGLAERIDKELNALLPPYMSNGIRVVPPPYGADTPWFGAKIIGNLSTFPG 293
+VLSGGT G+AER+ KE++AL PP M I+VV PP + W G I+ +LSTF
Sbjct: 287 IVLSGGTTMFPGIAERMTKEISALAPPTMR--IKVVAPPEXKYSVWIGGSILASLSTFQQ 344
Query: 292 PWCVEKKLFRQKPRL 248
W V+ + P +
Sbjct: 345 MWIVKSEYDESGPSI 359
>sp|Q9Y702|ACT1_SCHCO Actin 1 (Beta-actin) gi|4887630|dbj|BAA77815.1| beta-actin
[Schizophyllum commune]
gi|5053107|gb|AAD38853.1|AF156157_1 actin 1
[Schizophyllum commune]
Length = 375
Score = 60.1 bits (144), Expect = 1e-08
Identities = 30/73 (41%), Positives = 42/73 (57%)
Frame = -1
Query: 472 VVLSGGTACLTGLAERIDKELNALLPPYMSNGIRVVPPPYGADTPWFGAKIIGNLSTFPG 293
VVLSGGT G+A+R+ KEL AL P M +++V PP + W G I+ +LSTF
Sbjct: 297 VVLSGGTTMFPGIADRMQKELTALSPSSMK--VKIVAPPERKYSVWIGGSILASLSTFQN 354
Query: 292 PWCVEKKLFRQKP 254
WC +++ P
Sbjct: 355 LWCSKQEYDESGP 367
>ref|NP_181740.1| hypothetical protein; protein id: At2g42100.1 [Arabidopsis
thaliana] gi|25452788|sp|Q8RYC2|ACT5_ARATH Putative
actin 5 gi|25295735|pir||H84849 probable actin
[imported] - Arabidopsis thaliana
gi|20198321|gb|AAM15522.1| putative actin [Arabidopsis
thaliana]
Length = 378
Score = 59.7 bits (143), Expect = 2e-08
Identities = 30/71 (42%), Positives = 43/71 (60%)
Frame = -1
Query: 472 VVLSGGTACLTGLAERIDKELNALLPPYMSNGIRVVPPPYGADTPWFGAKIIGNLSTFPG 293
+VLSGGT G+A+R++KE+NAL PP M I+VV PP + W G I+ +LS+F
Sbjct: 300 IVLSGGTTMFPGIADRMNKEINALAPPSMK--IKVVAPPERKYSVWVGGSILASLSSFAP 357
Query: 292 PWCVEKKLFRQ 260
W + + Q
Sbjct: 358 MWITKAEYDEQ 368
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 440,442,787
Number of Sequences: 1393205
Number of extensions: 9952969
Number of successful extensions: 23649
Number of sequences better than 10.0: 1138
Number of HSP's better than 10.0 without gapping: 22087
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22704
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
