Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016505A_C01 KMC016505A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO52201.1| similar to Homo sapiens (Human). KIAA0939 protein... 34 1.3
ref|NP_657570.1| DsbD, Cytochrome C biogenesis protein transmemb... 33 2.9
gb|EAA12917.1| agCP10939 [Anopheles gambiae str. PEST] 33 3.8
emb|CAB54808.1| SPCC330.01c [Schizosaccharomyces pombe] 32 6.5
ref|NP_587701.1| RAD16 nucleotide excision repair protein homolo... 32 6.5
>gb|AAO52201.1| similar to Homo sapiens (Human). KIAA0939 protein (Fragment)
[Dictyostelium discoideum]
Length = 948
Score = 34.3 bits (77), Expect = 1.3
Identities = 19/49 (38%), Positives = 26/49 (52%), Gaps = 2/49 (4%)
Frame = +1
Query: 427 FPFSLEESTSEHDVPIFSWKDLFKNLSPELSKFPLQLL--KVVTTSIPW 567
F SL + D+ +FSW LF L+ +S FP+ L K + T IPW
Sbjct: 414 FGLSLTAHEFKFDLGLFSWSILFTCLARAISVFPMCFLLNKFLKTKIPW 462
>ref|NP_657570.1| DsbD, Cytochrome C biogenesis protein transmembrane region
[Bacillus anthracis A2012]
Length = 115
Score = 33.1 bits (74), Expect = 2.9
Identities = 23/75 (30%), Positives = 33/75 (43%), Gaps = 2/75 (2%)
Frame = +3
Query: 81 YPTILGYYYNCSHNNFN--NVSLQRRKTSQPTFFLNGFDAVFRATGENAGFISVGVSQNM 254
YP L Y S + N L++R FFL GF +F A G FI G+ N
Sbjct: 26 YPAFLSYITGMSVSELKEENAMLRKRSMIHTAFFLLGFSIIFIAIGFGTSFIG-GIFTN- 83
Query: 255 YSSVRHRQSKIFLLL 299
Y + + IF+++
Sbjct: 84 YKDLIRQLGGIFIIV 98
>gb|EAA12917.1| agCP10939 [Anopheles gambiae str. PEST]
Length = 944
Score = 32.7 bits (73), Expect = 3.8
Identities = 14/39 (35%), Positives = 26/39 (65%)
Frame = +1
Query: 448 STSEHDVPIFSWKDLFKNLSPELSKFPLQLLKVVTTSIP 564
STSE ++P+ + L++ L P LS++ + LLK++ + P
Sbjct: 527 STSEGEIPLTPTEILYQALLPNLSQYMISLLKILLAAAP 565
>emb|CAB54808.1| SPCC330.01c [Schizosaccharomyces pombe]
Length = 688
Score = 32.0 bits (71), Expect = 6.5
Identities = 33/143 (23%), Positives = 53/143 (36%), Gaps = 20/143 (13%)
Frame = -2
Query: 515 SSGERFLNRSFQENMGTSCSEVDSSKEKGNRCAHLVPSVLESDYQSNCFPQNL------- 357
S E + + MGTSC++++S+ KG H V D + N Q +
Sbjct: 89 SEDEEVVENNLHSQMGTSCNKINSNSNKGKENMHFVLDD-NGDSKGNASNQQVERDDKLD 147
Query: 356 -----WLQKKFRSSYSSKSTL-----QGI*QQEDFALSVPN*TVHVLRHTYTYEPSI--- 216
W K+F S+ L Q LS+ + + H T E +
Sbjct: 148 METTRWNGKEFEEPLSTNKKLIIQSNNTSSQHSTPPLSISDTSTHTGSSTDNVEANPNTG 207
Query: 215 FSSSSKNCIKAIEKKSRLTSFSS 147
FSS+ K +++ K + SS
Sbjct: 208 FSSARKRSLRSSNLKKKFVPLSS 230
>ref|NP_587701.1| RAD16 nucleotide excision repair protein homolog
[Schizosaccharomyces pombe] gi|7493254|pir||T41479 RAD16
nucleotide excision repair protein homolog - fission
yeast (Schizosaccharomyces pombe)
gi|3647341|emb|CAA21065.1| RAD16 nucleotide excision
repair protein homolog [Schizosaccharomyces pombe]
Length = 963
Score = 32.0 bits (71), Expect = 6.5
Identities = 33/143 (23%), Positives = 53/143 (36%), Gaps = 20/143 (13%)
Frame = -2
Query: 515 SSGERFLNRSFQENMGTSCSEVDSSKEKGNRCAHLVPSVLESDYQSNCFPQNL------- 357
S E + + MGTSC++++S+ KG H V D + N Q +
Sbjct: 89 SEDEEVVENNLHSQMGTSCNKINSNSNKGKENMHFVLDD-NGDSKGNASNQQVERDDKLD 147
Query: 356 -----WLQKKFRSSYSSKSTL-----QGI*QQEDFALSVPN*TVHVLRHTYTYEPSI--- 216
W K+F S+ L Q LS+ + + H T E +
Sbjct: 148 METTRWNGKEFEEPLSTNKKLIIQSNNTSSQHSTPPLSISDTSTHTGSSTDNVEANPNTG 207
Query: 215 FSSSSKNCIKAIEKKSRLTSFSS 147
FSS+ K +++ K + SS
Sbjct: 208 FSSARKRSLRSSNLKKKFVPLSS 230
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,927,944
Number of Sequences: 1393205
Number of extensions: 9211811
Number of successful extensions: 23640
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 22820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23634
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
