Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016503A_C01 KMC016503A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC37639.1| SERK2 protein [Zea mays] 246 1e-64
emb|CAC37641.1| somatic embryogenesis receptor-like kinase 2 [Ze... 244 4e-64
ref|NP_567920.1| somatic embryogenesis receptor-like kinase -lik... 239 2e-62
gb|AAK68074.1|AF384970_1 somatic embryogenesis receptor-like kin... 239 2e-62
gb|AAN64293.1| somatic embryogenesis receptor kinase 1 [Medicago... 238 5e-62
>emb|CAC37639.1| SERK2 protein [Zea mays]
Length = 626
Score = 246 bits (628), Expect = 1e-64
Identities = 129/188 (68%), Positives = 147/188 (77%), Gaps = 13/188 (6%)
Frame = +2
Query: 26 PQLGQLSNLQYLELYSNNMTGKIPDELGNLTNLVSLDLYLNNLTGNIPSTLGNLGKLRFL 205
PQLGQL NLQYLELYSNN++G IP ELGNLTNLVSLDLY+NN +GNIP +LGNL KLRFL
Sbjct: 89 PQLGQLKNLQYLELYSNNISGTIPPELGNLTNLVSLDLYMNNFSGNIPDSLGNLVKLRFL 148
Query: 206 RLNNNTLSGGIPMTLTNVSSLQVLDLSNNQLKGVVPVNGSFSLFTPISYQNNPGLIQPKN 385
RLNNN+L G IP++LTN+S+LQVLDLSNN L G VP GSFSLFTPIS+ NNP L P
Sbjct: 149 RLNNNSLVGPIPVSLTNISTLQVLDLSNNNLSGQVPSTGSFSLFTPISFANNPNLCGPGT 208
Query: 386 -------------PPSAPLSPPSQASSGNSNTGAIAGGVAAGAALLFAAPAIALAYLRKK 526
PP P SPP+Q S+G S+TGAIAGGVAAGAAL+FA PAIA A R++
Sbjct: 209 SKPCPGAPPFSPPPPFNPPSPPTQ-STGASSTGAIAGGVAAGAALVFAVPAIAFAMWRRR 267
Query: 527 KPEDHFFD 550
KPE+HFFD
Sbjct: 268 KPEEHFFD 275
>emb|CAC37641.1| somatic embryogenesis receptor-like kinase 2 [Zea mays]
Length = 626
Score = 244 bits (624), Expect = 4e-64
Identities = 128/188 (68%), Positives = 146/188 (77%), Gaps = 13/188 (6%)
Frame = +2
Query: 26 PQLGQLSNLQYLELYSNNMTGKIPDELGNLTNLVSLDLYLNNLTGNIPSTLGNLGKLRFL 205
PQLGQL NLQYLELYSNN++G IP ELGNLTNLVSLDLY+NN +GNIP +LGNL KLRFL
Sbjct: 89 PQLGQLKNLQYLELYSNNISGTIPPELGNLTNLVSLDLYMNNFSGNIPDSLGNLVKLRFL 148
Query: 206 RLNNNTLSGGIPMTLTNVSSLQVLDLSNNQLKGVVPVNGSFSLFTPISYQNNPGLIQPKN 385
RLNNN+L G IP++LTN+S+LQVLDLSNN L G VP GSFSLFTPIS+ NNP L P
Sbjct: 149 RLNNNSLVGPIPVSLTNISTLQVLDLSNNNLSGQVPSTGSFSLFTPISFANNPNLCGPGT 208
Query: 386 -------------PPSAPLSPPSQASSGNSNTGAIAGGVAAGAALLFAAPAIALAYLRKK 526
PP P SPP+Q S+G S+TGAIAGGVAAGAAL+F PAIA A R++
Sbjct: 209 SKPCPGAPPFSPPPPFNPPSPPTQ-STGASSTGAIAGGVAAGAALVFXVPAIAFAMWRRR 267
Query: 527 KPEDHFFD 550
KPE+HFFD
Sbjct: 268 KPEEHFFD 275
>ref|NP_567920.1| somatic embryogenesis receptor-like kinase -like protein; protein
id: At4g33430.1, supported by cDNA: gi_14573458
[Arabidopsis thaliana]
Length = 615
Score = 239 bits (610), Expect = 2e-62
Identities = 127/175 (72%), Positives = 142/175 (80%), Gaps = 1/175 (0%)
Frame = +2
Query: 29 QLGQLSNLQYLELYSNNMTGKIPDELGNLTNLVSLDLYLNNLTGNIPSTLGNLGKLRFLR 208
QLGQL NLQYLELYSNN+TG IP++LGNLT LVSLDLYLNNL+G IPSTLG L KLRFLR
Sbjct: 87 QLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLR 146
Query: 209 LNNNTLSGGIPMTLTNVSSLQVLDLSNNQLKGVVPVNGSFSLFTPISYQNNPGLIQPKNP 388
LNNN+LSG IP +LT V +LQVLDLSNN L G +PVNGSFSLFTPIS+ N P +P
Sbjct: 147 LNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKLTPLPASP 206
Query: 389 PSAPLSP-PSQASSGNSNTGAIAGGVAAGAALLFAAPAIALAYLRKKKPEDHFFD 550
P P+SP P + N TGAIAGGVAAGAALLFA PAIALA+ R+KKP+DHFFD
Sbjct: 207 P-PPISPTPPSPAGSNRITGAIAGGVAAGAALLFAVPAIALAWWRRKKPQDHFFD 260
>gb|AAK68074.1|AF384970_1 somatic embryogenesis receptor-like kinase 3 [Arabidopsis thaliana]
Length = 615
Score = 239 bits (610), Expect = 2e-62
Identities = 127/175 (72%), Positives = 142/175 (80%), Gaps = 1/175 (0%)
Frame = +2
Query: 29 QLGQLSNLQYLELYSNNMTGKIPDELGNLTNLVSLDLYLNNLTGNIPSTLGNLGKLRFLR 208
QLGQL NLQYLELYSNN+TG IP++LGNLT LVSLDLYLNNL+G IPSTLG L KLRFLR
Sbjct: 87 QLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSLDLYLNNLSGPIPSTLGRLKKLRFLR 146
Query: 209 LNNNTLSGGIPMTLTNVSSLQVLDLSNNQLKGVVPVNGSFSLFTPISYQNNPGLIQPKNP 388
LNNN+LSG IP +LT V +LQVLDLSNN L G +PVNGSFSLFTPIS+ N P +P
Sbjct: 147 LNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKLTPLPASP 206
Query: 389 PSAPLSP-PSQASSGNSNTGAIAGGVAAGAALLFAAPAIALAYLRKKKPEDHFFD 550
P P+SP P + N TGAIAGGVAAGAALLFA PAIALA+ R+KKP+DHFFD
Sbjct: 207 P-PPISPTPPSPAGSNRITGAIAGGVAAGAALLFAVPAIALAWWRRKKPQDHFFD 260
>gb|AAN64293.1| somatic embryogenesis receptor kinase 1 [Medicago truncatula]
gi|24935326|gb|AAN64294.1| somatic embryogenesis
receptor kinase 1 [Medicago truncatula]
Length = 627
Score = 238 bits (606), Expect = 5e-62
Identities = 127/187 (67%), Positives = 140/187 (73%), Gaps = 12/187 (6%)
Frame = +2
Query: 26 PQLGQLSNLQYLELYSNNMTGKIPDELGNLTNLVSLDLYLNNLTGNIPSTLGNLGKLRFL 205
PQLGQL NLQYLELYSNN+TG IP +LGNLTNLVSLDLYLN G IP +LG L KLRFL
Sbjct: 89 PQLGQLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNRFNGPIPDSLGKLSKLRFL 148
Query: 206 RLNNNTLSGGIPMTLTNVSSLQVLDLSNNQLKGVVPVNGSFSLFTPISYQNNPGLIQPKN 385
RLNNN+L G IPM+LTN+S+LQVLDLSNNQL GVVP NGSFSLFTPIS+ NN L P
Sbjct: 149 RLNNNSLMGPIPMSLTNISALQVLDLSNNQLSGVVPDNGSFSLFTPISFANNLNLCGPVT 208
Query: 386 ----PPSAPLSPPS--------QASSGNSNTGAIAGGVAAGAALLFAAPAIALAYLRKKK 529
P S P SPP A TGAIAGGVAAGAALLFAAPAIA A+ R++K
Sbjct: 209 GHPCPGSPPFSPPPPFVPPPPISAPGSGGATGAIAGGVAAGAALLFAAPAIAFAWWRRRK 268
Query: 530 PEDHFFD 550
P++ FFD
Sbjct: 269 PQEFFFD 275
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 500,286,909
Number of Sequences: 1393205
Number of extensions: 11273114
Number of successful extensions: 66016
Number of sequences better than 10.0: 2450
Number of HSP's better than 10.0 without gapping: 47646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60862
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
