Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016500A_C01 KMC016500A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA16606.1| VAR1 protein, putative [Plasmodium yoelii yoelii] 33 1.8
ref|NP_507301.1| Predicted CDS, 7 transmembrane chemoreceptor fa... 33 2.4
ref|NP_702763.1| hypothetical protein [Plasmodium falciparum 3D7... 32 7.0
gb|AAB58556.3| asparagine-rich protein [Plasmodium falciparum] 32 7.0
>gb|EAA16606.1| VAR1 protein, putative [Plasmodium yoelii yoelii]
Length = 425
Score = 33.5 bits (75), Expect = 1.8
Identities = 19/54 (35%), Positives = 26/54 (47%)
Frame = +2
Query: 239 EKLKSYRIYKIKIKTYKSISN*IHGFVYIFSLKFTSLMYLFCTSFLLFNFLGSF 400
+K Y+ +KT+KSI I G Y+ F Y F TS L+NF S+
Sbjct: 327 QKCIKYKNLLNLLKTFKSIIKCIIGICYMKKKNFNIASYCFTTSLQLYNFCPSY 380
>ref|NP_507301.1| Predicted CDS, 7 transmembrane chemoreceptor family member family
member [Caenorhabditis elegans] gi|7509227|pir||T26349
hypothetical protein Y102A5C.29 - Caenorhabditis elegans
gi|3880643|emb|CAA20951.1| Hypothetical protein
Y102A5C.29 [Caenorhabditis elegans]
Length = 347
Score = 33.1 bits (74), Expect = 2.4
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -2
Query: 502 QGSYYIAQKFRLYWSNQIMLARNGSLIWIWLRLLKRAKKVK---EKEAGAEQVHE*SEFK 332
+G + + FR SNQ+ L IWI+L L + + A Q++E S
Sbjct: 76 KGGITLREGFRTIMSNQMALT-----IWIFLLCLVLPASITCFIYRHNAASQINENSNSS 130
Query: 331 TKYVDKTMNLVANTFVSFYFYF 266
TKY KT+ ++ N F F
Sbjct: 131 TKYSHKTLAMILNHIFPFLTAF 152
>ref|NP_702763.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|6562744|emb|CAB62883.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1298
Score = 31.6 bits (70), Expect = 7.0
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 55 SIYIHATNYQGR--IIIYKKFLRQD*NGNRIHHDKNXQPAK*NEEREATYQSPILAKSIS 228
+IY N + + +I+ +K QD N N + KN P K N + E+TY + K+++
Sbjct: 9 NIYFKGFNERNKNYLIVNEKENIQDCNNNLLELSKNIIPIK-NYKEESTYSKLRVVKNMN 67
Query: 229 SFT*EIKKLPHLQNKNKN 282
+ + +P N N N
Sbjct: 68 TANNTVSYVPLNNNNNNN 85
>gb|AAB58556.3| asparagine-rich protein [Plasmodium falciparum]
Length = 1157
Score = 31.6 bits (70), Expect = 7.0
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 55 SIYIHATNYQGR--IIIYKKFLRQD*NGNRIHHDKNXQPAK*NEEREATYQSPILAKSIS 228
+IY N + + +I+ +K QD N N + KN P K N + E+TY + K+++
Sbjct: 9 NIYFKGFNERNKNYLIVNEKENIQDCNNNLLELSKNIIPIK-NYKEESTYSKLRVVKNMN 67
Query: 229 SFT*EIKKLPHLQNKNKN 282
+ + +P N N N
Sbjct: 68 TANNTVSYVPLNNNNNNN 85
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,203,488
Number of Sequences: 1393205
Number of extensions: 8119836
Number of successful extensions: 17871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17384
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17867
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
