Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016498A_C01 KMC016498A_c01
(528 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42730.1| unknown protein [Arabidopsis thaliana] 84 1e-15
ref|XP_111056.1| hypothetical protein XP_111056 [Mus musculus] 36 0.32
gb|AAF78387.1|AC069551_20 T10O22.16 [Arabidopsis thaliana] 33 1.6
gb|AAF97835.1|AC034107_18 EST gb|AI997943 comes from this gene. ... 33 1.6
pir||F86378 protein F21J9.12 [imported] - Arabidopsis thaliana g... 32 3.5
>dbj|BAC42730.1| unknown protein [Arabidopsis thaliana]
Length = 274
Score = 83.6 bits (205), Expect = 1e-15
Identities = 36/51 (70%), Positives = 45/51 (87%)
Frame = -1
Query: 528 GFVPKQGKVIADRIDGIWVSGSRVLMSRPRARLGIIGYLLIMHLWLLGAIL 376
G +P QGK+IADR+DGIWVSG RVLMSRP+ARLG++ Y L++HLWLL +IL
Sbjct: 224 GLIPTQGKIIADRVDGIWVSGGRVLMSRPQARLGVMVYSLLLHLWLLASIL 274
>ref|XP_111056.1| hypothetical protein XP_111056 [Mus musculus]
Length = 334
Score = 35.8 bits (81), Expect = 0.32
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Frame = -3
Query: 454 DESSQSKIRNHWLFAHHAFMATGGDLV--EKM*SNLTLNE-CPASANCIVDINSPLLFLP 284
D + R+HWL HHAF+ G L+ E + T E CP A + SP++ L
Sbjct: 77 DNCFAGETRSHWLQEHHAFLRYTGKLMNWEPLFLARTHREICPCQATSEM---SPVMLLS 133
Query: 283 RFLMKPNL 260
+FL++ NL
Sbjct: 134 QFLVRDNL 141
>gb|AAF78387.1|AC069551_20 T10O22.16 [Arabidopsis thaliana]
Length = 635
Score = 33.5 bits (75), Expect = 1.6
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = -1
Query: 492 RIDGIWVSGSRVLMSRPRARLGIIGYLLIMHLWLLGAIL 376
+++ I++SG+ L P A++ + YL+ +HLW+L +L
Sbjct: 569 QLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVLYILL 607
>gb|AAF97835.1|AC034107_18 EST gb|AI997943 comes from this gene. [Arabidopsis thaliana]
Length = 654
Score = 33.5 bits (75), Expect = 1.6
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = -1
Query: 492 RIDGIWVSGSRVLMSRPRARLGIIGYLLIMHLWLLGAIL 376
+++ I++SG+ L P A++ + YL+ +HLW+L +L
Sbjct: 588 QLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVLYILL 626
>pir||F86378 protein F21J9.12 [imported] - Arabidopsis thaliana
gi|9743334|gb|AAF97958.1|AC000103_8 F21J9.12 [Arabidopsis
thaliana]
Length = 1864
Score = 32.3 bits (72), Expect = 3.5
Identities = 12/17 (70%), Positives = 15/17 (87%)
Frame = -1
Query: 528 GFVPKQGKVIADRIDGI 478
G +P QGK+IADR+DGI
Sbjct: 1790 GLIPTQGKIIADRVDGI 1806
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,435,181
Number of Sequences: 1393205
Number of extensions: 8938299
Number of successful extensions: 20198
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 19617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20197
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
