Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016497A_C01 KMC016497A_c01
(590 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_242925.1| hypothetical protein XP_242925 [Rattus norvegicus] 33 2.7
ref|NP_342629.1| Maltose ABC transporter [Sulfolobus solfataricu... 32 6.0
>ref|XP_242925.1| hypothetical protein XP_242925 [Rattus norvegicus]
Length = 469
Score = 33.1 bits (74), Expect = 2.7
Identities = 23/71 (32%), Positives = 36/71 (50%)
Frame = +2
Query: 224 MIFNLLIASSKYHPPNDQTKAKSNDKKDSRKIV*NEWIGCTKNQEQEILLFQNLQGPRSK 403
M F+LL+AS + +A + +R IV N W+G + E+ + LF+ L PR K
Sbjct: 65 MHFSLLLASLQ--------RASRYCAEVTRLIVQNGWLGRPGSWEKLVNLFEKLTDPRGK 116
Query: 404 GQSLHVYSSTS 436
G+ S +S
Sbjct: 117 GEKTQDVSGSS 127
>ref|NP_342629.1| Maltose ABC transporter [Sulfolobus solfataricus]
gi|25395132|pir||D90270 maltose ABC transporter SSO1171
[imported] - Sulfolobus solfataricus
gi|13814361|gb|AAK41419.1| Maltose ABC transporter
[Sulfolobus solfataricus]
Length = 523
Score = 32.0 bits (71), Expect = 6.0
Identities = 18/55 (32%), Positives = 30/55 (53%)
Frame = +3
Query: 57 ISNSLMCKIKIIYIQIVRTEKYTIFSNASTPAQ*NQSGSQFTNTTDSFTSITCLN 221
IS +L+ I ++ I I Y S+ +PA + + + FT+TT S T+ + LN
Sbjct: 13 ISKTLVAVIIVVVIVIAIGGVYAFLSSQHSPAAPSSTTTSFTSTTSSTTTSSVLN 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 487,204,128
Number of Sequences: 1393205
Number of extensions: 9874713
Number of successful extensions: 22526
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22428
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
