Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016495A_C01 KMC016495A_c01
(616 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40108.1| OSJNBa0035O13.8 [Oryza sativa (japonica cultivar... 115 5e-25
gb|AAM93706.1| putative gag-pol precursor [Oryza sativa (japonic... 112 3e-24
emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum] 108 4e-23
gb|AAM08527.1|AC068654_29 putative retroelement [Oryza sativa] 108 6e-23
emb|CAD40484.1| OSJNBa0067G20.23 [Oryza sativa (japonica cultiva... 106 3e-22
>emb|CAD40108.1| OSJNBa0035O13.8 [Oryza sativa (japonica cultivar-group)]
Length = 1421
Score = 115 bits (288), Expect = 5e-25
Identities = 55/120 (45%), Positives = 83/120 (68%), Gaps = 4/120 (3%)
Frame = -2
Query: 615 VFENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEA---- 448
+ +NG QF S QD+C G+G+++ F+SV HPQ+NGQ E AN ++L+GIK R+Y+
Sbjct: 1201 ITDNGSQFISADFQDYCIGLGVKICFASVSHPQSNGQAERANGIVLQGIKTRVYDRLMSH 1260
Query: 447 EGRWIDELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISNFSW*TKARHEEENRMN 268
+ +W++ELP VLW+ T P +S KETPF L YG++ MLP E+ + S + +H +EN+ N
Sbjct: 1261 DKKWVEELPSVLWAVRTTPTTSNKETPFFLVYGSEAMLPDELRHQSTRVQ-KHSDENQEN 1319
>gb|AAM93706.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
Length = 816
Score = 112 bits (281), Expect = 3e-24
Identities = 51/106 (48%), Positives = 76/106 (71%), Gaps = 4/106 (3%)
Frame = -2
Query: 615 VFENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEA---- 448
+ +NG QF S QD+C G+G+++ F+SV HPQ+NGQ E AN ++L+GIK R+Y+
Sbjct: 708 ITDNGSQFISADFQDYCIGLGVKICFASVPHPQSNGQVERANNIVLQGIKTRIYDRLMSH 767
Query: 447 EGRWIDELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISNFS 310
+ +W++ELP VLW+ +T P +S KETPF L YG++ MLP E+ + S
Sbjct: 768 DKKWVEELPSVLWAVHTTPTTSNKETPFFLVYGSEAMLPSELRHQS 813
>emb|CAC33017.1| hypothetical protein [Antirrhinum hispanicum]
Length = 1455
Score = 108 bits (271), Expect = 4e-23
Identities = 52/126 (41%), Positives = 81/126 (64%)
Frame = -2
Query: 615 VFENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEAEGRW 436
V +NGIQFTS Q +CD IQ RF+SV +PQ+NGQ E N+ +++G+K RL +G+W
Sbjct: 1320 VSDNGIQFTSDQLSKWCDHWKIQHRFTSVGYPQSNGQVEVTNRTLIQGLKARLMTYQGKW 1379
Query: 435 IDELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISNFSW*TKARHEEENRMNMAVG 256
++E+P +LW+Y T ++S ETPF L YG + ++ EIS S + +E N+ ++ +
Sbjct: 1380 VEEIPSLLWAYRTTARASTVETPFSLAYGHEAVILAEISTSSCRIQEYNEGRNKEHVILE 1439
Query: 255 WEKLPE 238
+ L E
Sbjct: 1440 LDLLEE 1445
>gb|AAM08527.1|AC068654_29 putative retroelement [Oryza sativa]
Length = 756
Score = 108 bits (270), Expect = 6e-23
Identities = 49/106 (46%), Positives = 73/106 (68%), Gaps = 4/106 (3%)
Frame = -2
Query: 615 VFENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEA---- 448
+ +NG QF S QD+C G+G+++ F+ V HPQ+NGQ E AN ++L+GIK R+Y+
Sbjct: 591 ITDNGSQFISADFQDYCIGLGVKICFALVSHPQSNGQVERANSIVLQGIKTRVYDRLMSH 650
Query: 447 EGRWIDELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEISNFS 310
+ +W++ELP V W+ T P +S KETPF L YG++ MLP E+ + S
Sbjct: 651 DKKWVEELPSVQWAVRTTPTTSNKETPFFLVYGSEAMLPTELRHQS 696
>emb|CAD40484.1| OSJNBa0067G20.23 [Oryza sativa (japonica cultivar-group)]
Length = 868
Score = 106 bits (264), Expect = 3e-22
Identities = 48/102 (47%), Positives = 71/102 (69%), Gaps = 4/102 (3%)
Frame = -2
Query: 615 VFENGIQFTSKQTQDFCDGMGIQMRFSSVKHPQTNGQTEAANKVILKGIKRRLYEA---- 448
+ +NG QF S QD+C G+G+++ F+SV HPQ+NGQ E AN ++L+GIK R+Y+
Sbjct: 767 ITDNGSQFISADFQDYCIGLGVKICFASVSHPQSNGQVERANGIVLQGIKTRVYDRLMSH 826
Query: 447 EGRWIDELPIVLWSYNTMPQSSIKETPF*LTYGADTMLPVEI 322
+ +W++ELP VLW+ T P + KET F L YG++ MLP E+
Sbjct: 827 DKKWVEELPSVLWAVRTTPTTCNKETTFFLVYGSEAMLPSEL 868
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,590,571
Number of Sequences: 1393205
Number of extensions: 12061507
Number of successful extensions: 36711
Number of sequences better than 10.0: 1481
Number of HSP's better than 10.0 without gapping: 35258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36479
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
