Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016494A_C01 KMC016494A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20879.1| putative IkappaB kinase complex-associated prote... 104 7e-22
ref|NP_196872.1| putative protein; protein id: At5g13680.1 [Arab... 103 1e-21
gb|EAA29753.1| hypothetical protein [Neurospora crassa] 35 0.52
ref|NP_611360.1| CG15071-PA [Drosophila melanogaster] gi|7302571... 34 1.2
gb|AAN07107.1| merozoite surface protein 5 [Plasmodium falciparum] 34 1.5
>dbj|BAC20879.1| putative IkappaB kinase complex-associated protein [Oryza sativa
(japonica cultivar-group)]
Length = 1337
Score = 104 bits (260), Expect = 7e-22
Identities = 57/102 (55%), Positives = 69/102 (66%), Gaps = 1/102 (0%)
Frame = -2
Query: 568 EEMXLVEHLKGMSLTVEARRELKSLLVSLMMFGEGEIARKLQQMGENFPFSHMAAVRLAE 389
EEM LVEHLKGMSLT A ELKSLLV L+ G E AR++Q G+NF S AAV+LAE
Sbjct: 1225 EEMALVEHLKGMSLTSGALTELKSLLVVLIQLGREETARQVQLAGDNFEVSQRAAVKLAE 1284
Query: 388 DTISHDTINEQAHTLEPYTRKVKV-EMHHSEALSWRIKVFLP 266
DT+S+D I+E AHTLE Y + ++ + SE WRIK P
Sbjct: 1285 DTVSNDKIDENAHTLENYVKMLRAHQSADSETTCWRIKALSP 1326
>ref|NP_196872.1| putative protein; protein id: At5g13680.1 [Arabidopsis thaliana]
gi|9758034|dbj|BAB08695.1|
gene_id:MSH12.15~ref|NP_003631.1~similar to unknown
protein [Arabidopsis thaliana]
Length = 1319
Score = 103 bits (258), Expect = 1e-21
Identities = 51/102 (50%), Positives = 70/102 (68%)
Frame = -2
Query: 574 ADEEMXLVEHLKGMSLTVEARRELKSLLVSLMMFGEGEIARKLQQMGENFPFSHMAAVRL 395
A EEM LV+HLKGM +T +RELKSLL+ L+ GE E A+KLQQ ENF S +AAV L
Sbjct: 1216 AGEEMALVDHLKGMRMTDGGKRELKSLLICLVTLGEMESAQKLQQTAENFQVSQVAAVEL 1275
Query: 394 AEDTISHDTINEQAHTLEPYTRKVKVEMHHSEALSWRIKVFL 269
A DT+S ++++E+ + E Y +K + S+A SW +KVF+
Sbjct: 1276 AHDTVSSESVDEEVYCFERYAQKTRSTARDSDAFSWMLKVFI 1317
>gb|EAA29753.1| hypothetical protein [Neurospora crassa]
Length = 1015
Score = 35.4 bits (80), Expect = 0.52
Identities = 17/45 (37%), Positives = 27/45 (59%)
Frame = +3
Query: 87 SSP*RKINLHNFHPPSSSSSSSSTHILLNPETTKNQNPNAPTSSN 221
SS + L PSS +S+ S+ +L NP ++ N NP++ +SSN
Sbjct: 817 SSSSKNTELKALSNPSSKASNPSSDVLSNPSSSSNANPSSSSSSN 861
>ref|NP_611360.1| CG15071-PA [Drosophila melanogaster] gi|7302571|gb|AAF57653.1|
CG15071-PA [Drosophila melanogaster]
Length = 206
Score = 34.3 bits (77), Expect = 1.2
Identities = 19/65 (29%), Positives = 34/65 (52%)
Frame = +3
Query: 102 KINLHNFHPPSSSSSSSSTHILLNPETTKNQNPNAPTSSNSKQKISILIG*VHS*GKKTL 281
K+N +NF + S T PET +N PN+ ++++ LIG ++ ++ L
Sbjct: 65 KLNPNNFILKDDEGTDSKTESCQEPETGRNPRPNSSSTAD-------LIGLINEIEQEKL 117
Query: 282 ILHER 296
+LHE+
Sbjct: 118 VLHEK 122
>gb|AAN07107.1| merozoite surface protein 5 [Plasmodium falciparum]
Length = 272
Score = 33.9 bits (76), Expect = 1.5
Identities = 15/36 (41%), Positives = 22/36 (60%)
Frame = +3
Query: 123 HPPSSSSSSSSTHILLNPETTKNQNPNAPTSSNSKQ 230
H S S+S++S +I PE +N NPN +S NS +
Sbjct: 89 HDESKSNSNNSQNIQKEPEEKENSNPNLDSSENSSE 124
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,150,539
Number of Sequences: 1393205
Number of extensions: 11000027
Number of successful extensions: 36244
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34854
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
