Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016493A_C01 KMC016493A_c01
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174313.1| hypothetical protein; protein id: At1g30220.1, ... 221 6e-57
gb|AAF91431.1| putative Na+/myo-inositol symporter [Mesembryanth... 172 4e-42
ref|NP_193381.1| membrane transporter like protein; protein id: ... 167 2e-40
gb|AAF91432.1|AF280432_1 putative Na+/myo-inositol symporter [Me... 165 7e-40
ref|NP_181117.1| putative sugar transporter; protein id: At2g357... 160 1e-38
>ref|NP_174313.1| hypothetical protein; protein id: At1g30220.1, supported by cDNA:
gi_18377758 [Arabidopsis thaliana]
gi|25309027|pir||D86426 hypothetical protein F12P21.2 -
Arabidopsis thaliana
gi|12320850|gb|AAG50560.1|AC073506_2 hypothetical
protein [Arabidopsis thaliana]
gi|18377759|gb|AAL67029.1| unknown protein [Arabidopsis
thaliana] gi|21689841|gb|AAM67564.1| unknown protein
[Arabidopsis thaliana]
Length = 580
Score = 221 bits (564), Expect = 6e-57
Identities = 98/153 (64%), Positives = 126/153 (82%)
Frame = -3
Query: 723 KLSPGACLLSDDNTRTQCQKVHHRPWYTQGCPSKLGFLALGGLALYIIFFSPGMGTVPWV 544
K PGAC +SDD+ + C +R WYT+GCPS G+ AL GL LYIIFFSPGMGTVPW+
Sbjct: 419 KEHPGACWISDDSVKDLCHN-ENRLWYTRGCPSNFGWFALLGLGLYIIFFSPGMGTVPWI 477
Query: 543 VNSEIYPLRYRGICGGIASTTVWVSNLVVSQSFLSLTQTIGTAWTFMMFGIIAIIGIFFV 364
VNSEIYPLR+RGICGGIA+T W+SNL+V+QSFLSLT+ IGT+WTF++FG+I++I + FV
Sbjct: 478 VNSEIYPLRFRGICGGIAATANWISNLIVAQSFLSLTEAIGTSWTFLIFGVISVIALLFV 537
Query: 363 LIFVPETKGVPMEEVESMLNKRAVHLKFWEKTS 265
++ VPETKG+PMEE+E ML +R++ KFW+K S
Sbjct: 538 MVCVPETKGMPMEEIEKMLERRSMEFKFWKKKS 570
>gb|AAF91431.1| putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum]
Length = 581
Score = 172 bits (436), Expect = 4e-42
Identities = 77/155 (49%), Positives = 111/155 (70%)
Frame = -3
Query: 714 PGACLLSDDNTRTQCQKVHHRPWYTQGCPSKLGFLALGGLALYIIFFSPGMGTVPWVVNS 535
PGAC+ + C R ++T+GCPSK GF+A+ L LYII +SPGMGTVPW++NS
Sbjct: 424 PGACVAQTSTMKNACLG-EKRIYFTEGCPSKFGFMAIIVLGLYIITYSPGMGTVPWILNS 482
Query: 534 EIYPLRYRGICGGIASTTVWVSNLVVSQSFLSLTQTIGTAWTFMMFGIIAIIGIFFVLIF 355
EIYPLRYRGICGGI + T+W +NL+VS++FL+LT+ +G++ TF+++ ++IG+ + +
Sbjct: 483 EIYPLRYRGICGGIGAVTLWCANLIVSETFLTLTEALGSSGTFLLYAGFSLIGLIVIFLL 542
Query: 354 VPETKGVPMEEVESMLNKRAVHLKFWEKTSGGEKN 250
VPETKG+P+E++E ML K FW GG K+
Sbjct: 543 VPETKGLPIEDIEKMLEK-----GFWPSLCGGNKD 572
>ref|NP_193381.1| membrane transporter like protein; protein id: At4g16480.1
[Arabidopsis thaliana] gi|7446726|pir||F71431
hypothetical protein - Arabidopsis thaliana
gi|2245004|emb|CAB10424.1| membrane transporter like
protein [Arabidopsis thaliana]
gi|7268398|emb|CAB78690.1| membrane transporter like
protein [Arabidopsis thaliana]
gi|28393478|gb|AAO42160.1| putative membrane transporter
[Arabidopsis thaliana] gi|28973605|gb|AAO64127.1|
putative membrane transporter [Arabidopsis thaliana]
Length = 582
Score = 167 bits (422), Expect = 2e-40
Identities = 76/137 (55%), Positives = 104/137 (75%)
Frame = -3
Query: 717 SPGACLLSDDNTRTQCQKVHHRPWYTQGCPSKLGFLALGGLALYIIFFSPGMGTVPWVVN 538
+PGAC++ D+ + C R ++ GCPSK GFLA+ L LYI+ ++PGMGTVPW+VN
Sbjct: 425 APGACVVLSDDMKATCSS-RGRTFFKDGCPSKFGFLAIVFLGLYIVVYAPGMGTVPWIVN 483
Query: 537 SEIYPLRYRGICGGIASTTVWVSNLVVSQSFLSLTQTIGTAWTFMMFGIIAIIGIFFVLI 358
SEIYPLRYRG+ GGIA+ + WVSNL+VS+SFLSLT +G++ TF++F + IG+FF+ +
Sbjct: 484 SEIYPLRYRGLGGGIAAVSNWVSNLIVSESFLSLTHALGSSGTFLLFAGFSTIGLFFIWL 543
Query: 357 FVPETKGVPMEEVESML 307
VPETKG+ EEVE +L
Sbjct: 544 LVPETKGLQFEEVEKLL 560
>gb|AAF91432.1|AF280432_1 putative Na+/myo-inositol symporter [Mesembryanthemum crystallinum]
Length = 581
Score = 165 bits (417), Expect = 7e-40
Identities = 77/140 (55%), Positives = 104/140 (74%)
Frame = -3
Query: 726 DKLSPGACLLSDDNTRTQCQKVHHRPWYTQGCPSKLGFLALGGLALYIIFFSPGMGTVPW 547
++L PG C+ D + C R ++T+GCPSK GFLA+ L YII +SPGMGTVPW
Sbjct: 421 NQLLPGGCVSRTDAMKVACHG-EKRVYFTEGCPSKFGFLAVILLGAYIISYSPGMGTVPW 479
Query: 546 VVNSEIYPLRYRGICGGIASTTVWVSNLVVSQSFLSLTQTIGTAWTFMMFGIIAIIGIFF 367
+VNSEIYPLRYRG+ GGIA+ + W SNL+VS++FL+LT+ +G A TF++F + IG+ F
Sbjct: 480 IVNSEIYPLRYRGVGGGIAAVSNWTSNLIVSETFLTLTEALGAAGTFLLFAGFSAIGLVF 539
Query: 366 VLIFVPETKGVPMEEVESML 307
+ + VPETKG+P+EEVE ML
Sbjct: 540 IYLLVPETKGLPIEEVEHML 559
>ref|NP_181117.1| putative sugar transporter; protein id: At2g35740.1 [Arabidopsis
thaliana] gi|25309025|pir||D84772 probable sugar
transporter [imported] - Arabidopsis thaliana
gi|4263781|gb|AAD15441.1| putative sugar transporter
[Arabidopsis thaliana]
Length = 580
Score = 160 bits (406), Expect = 1e-38
Identities = 72/137 (52%), Positives = 103/137 (74%)
Frame = -3
Query: 717 SPGACLLSDDNTRTQCQKVHHRPWYTQGCPSKLGFLALGGLALYIIFFSPGMGTVPWVVN 538
+PGAC++ + + C R ++ GCPSK G+LA+ L LYII ++PGMGTVPW+VN
Sbjct: 424 APGACIVQSADMKALCHS-KGRTFFKDGCPSKFGYLAIVFLGLYIIVYAPGMGTVPWIVN 482
Query: 537 SEIYPLRYRGICGGIASTTVWVSNLVVSQSFLSLTQTIGTAWTFMMFGIIAIIGIFFVLI 358
SEIYPLRYRG+ GGIA+ + W+SNLVVS++FL+LT +G++ TF++F + +G+FF+ +
Sbjct: 483 SEIYPLRYRGLAGGIAAVSNWMSNLVVSETFLTLTNAVGSSGTFLLFAGSSAVGLFFIWL 542
Query: 357 FVPETKGVPMEEVESML 307
VPETKG+ EEVE +L
Sbjct: 543 LVPETKGLQFEEVEKLL 559
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 638,769,123
Number of Sequences: 1393205
Number of extensions: 14527332
Number of successful extensions: 69484
Number of sequences better than 10.0: 833
Number of HSP's better than 10.0 without gapping: 44042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57429
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
