Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016490A_C01 KMC016490A_c01
(940 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC23098.1| phototropin [Vicia faba] 138 1e-31
pir||T06464 protein kinase (EC 2.7.1.-) - garden pea gi|556347|g... 128 1e-28
pir||T06809 protein kinase homolog - garden pea 121 1e-26
gb|AAB41023.2| phototropin-like protein PsPK4 [Pisum sativum] 121 1e-26
gb|AAM15725.1| phototropin 1 [Pisum sativum] 121 1e-26
>dbj|BAC23098.1| phototropin [Vicia faba]
Length = 963
Score = 138 bits (347), Expect = 1e-31
Identities = 69/89 (77%), Positives = 76/89 (84%), Gaps = 2/89 (2%)
Frame = -1
Query: 940 LKFPKSKQVSLSGKQLMYRLLQRDPSSRLGSKEGANEIKRHPFFRGINWALVRCTKPPEL 761
LK PKSKQVSLS KQL+Y LLQRDP+SRLGSK GAN+IK H FF+GINWALVRCTKPPEL
Sbjct: 875 LKLPKSKQVSLSAKQLIYHLLQRDPTSRLGSKGGANDIKHHSFFKGINWALVRCTKPPEL 934
Query: 760 DAPLFGTTEEEKKA--KYVDPVKEDMSVF 680
DAPLF T +EEK+ KYVD +EDMSVF
Sbjct: 935 DAPLFDTNKEEKEKDDKYVDNGQEDMSVF 963
>pir||T06464 protein kinase (EC 2.7.1.-) - garden pea gi|556347|gb|AAA50304.1|
protein kinase gi|445608|prf||1909355A protein kinase
Length = 428
Score = 128 bits (321), Expect = 1e-28
Identities = 63/80 (78%), Positives = 69/80 (85%), Gaps = 2/80 (2%)
Frame = -1
Query: 940 LKFPKSKQVSLSGKQLMYRLLQRDPSSRLGSKEGANEIKRHPFFRGINWALVRCTKPPEL 761
LKFPKSKQVSL KQL+Y LLQRDP+SRLGSK GAN+IK H FF+GINWALVRCTKPPEL
Sbjct: 344 LKFPKSKQVSLGAKQLIYYLLQRDPTSRLGSKGGANDIKNHSFFKGINWALVRCTKPPEL 403
Query: 760 DAPLFGTTEEEKKA--KYVD 707
DAPLF T +EEK+ KYVD
Sbjct: 404 DAPLFDTNKEEKEKEDKYVD 423
>pir||T06809 protein kinase homolog - garden pea
Length = 443
Score = 121 bits (304), Expect = 1e-26
Identities = 57/84 (67%), Positives = 67/84 (78%)
Frame = -1
Query: 940 LKFPKSKQVSLSGKQLMYRLLQRDPSSRLGSKEGANEIKRHPFFRGINWALVRCTKPPEL 761
LKFPKSK VS GKQL+Y LL RDP +RLGS EGANEIK HPFF+ INWALVRCTKPPEL
Sbjct: 355 LKFPKSKPVSPHGKQLIYWLLHRDPKNRLGSLEGANEIKNHPFFKNINWALVRCTKPPEL 414
Query: 760 DAPLFGTTEEEKKAKYVDPVKEDM 689
D P+ +E+K+AK +DP +D+
Sbjct: 415 DGPILLDNDEKKEAKEIDPGLDDL 438
>gb|AAB41023.2| phototropin-like protein PsPK4 [Pisum sativum]
Length = 976
Score = 121 bits (304), Expect = 1e-26
Identities = 57/84 (67%), Positives = 67/84 (78%)
Frame = -1
Query: 940 LKFPKSKQVSLSGKQLMYRLLQRDPSSRLGSKEGANEIKRHPFFRGINWALVRCTKPPEL 761
LKFPKSK VS GKQL+Y LL RDP +RLGS EGANEIK HPFF+ INWALVRCTKPPEL
Sbjct: 888 LKFPKSKPVSPHGKQLIYWLLHRDPKNRLGSLEGANEIKNHPFFKNINWALVRCTKPPEL 947
Query: 760 DAPLFGTTEEEKKAKYVDPVKEDM 689
D P+ +E+K+AK +DP +D+
Sbjct: 948 DGPILLDNDEKKEAKEIDPGLDDL 971
>gb|AAM15725.1| phototropin 1 [Pisum sativum]
Length = 976
Score = 121 bits (304), Expect = 1e-26
Identities = 57/84 (67%), Positives = 67/84 (78%)
Frame = -1
Query: 940 LKFPKSKQVSLSGKQLMYRLLQRDPSSRLGSKEGANEIKRHPFFRGINWALVRCTKPPEL 761
LKFPKSK VS GKQL+Y LL RDP +RLGS EGANEIK HPFF+ INWALVRCTKPPEL
Sbjct: 888 LKFPKSKPVSPHGKQLIYWLLHRDPKNRLGSLEGANEIKNHPFFKNINWALVRCTKPPEL 947
Query: 760 DAPLFGTTEEEKKAKYVDPVKEDM 689
D P+ +E+K+AK +DP +D+
Sbjct: 948 DGPILLDNDEKKEAKEIDPGLDDL 971
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 783,370,222
Number of Sequences: 1393205
Number of extensions: 16988514
Number of successful extensions: 40554
Number of sequences better than 10.0: 794
Number of HSP's better than 10.0 without gapping: 38302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40214
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 52414431048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
