Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016487A_C01 KMC016487A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C96653 hypothetical protein F16P17.2 [imported] - Arabidops... 142 4e-33
ref|NP_176475.1| unknown protein; protein id: At1g62870.1 [Arabi... 141 6e-33
pir||D86258 protein F5O11.10 [imported] - Arabidopsis thaliana g... 141 8e-33
ref|NP_172700.1| hypothetical protein; protein id: At1g12380.1 [... 141 8e-33
gb|AAM01106.1|AC098682_10 Putative transposable element [Oryza s... 36 0.47
>pir||C96653 hypothetical protein F16P17.2 [imported] - Arabidopsis thaliana
gi|8493576|gb|AAF75799.1|AC011000_2 Contains weak
similarity to T-type calcium channel isoform from Rattus
norvegicus gb|AF125161. EST gb|R30034 comes from this
gene. [Arabidopsis thaliana]
Length = 762
Score = 142 bits (358), Expect = 4e-33
Identities = 70/118 (59%), Positives = 96/118 (81%)
Frame = -1
Query: 624 DPMTGKMKVANPLSSRLVWETCLCEFKSLGKIAVRLIFLHATSSGFKSNWSFMRKISANK 445
DP++GKM++ANP SSRLVWET L EF+SLG++AVRLIFLHATS GFK N S +R +++N
Sbjct: 646 DPVSGKMRIANPQSSRLVWETYLSEFRSLGRVAVRLIFLHATSCGFKCNSSVLRWVNSN- 704
Query: 444 PHSSASLERAQKMVYIAAHAKLERRDFSSEEEKDAELFAMSGSEDGMLAEVYADATLV 271
S A+++RAQK+++I+A++K ERRDFS+EEE+DAEL AM+ ED +L +V D + V
Sbjct: 705 GRSRAAVDRAQKLIFISANSKFERRDFSNEEERDAELLAMANGEDDVLNDVLIDTSSV 762
>ref|NP_176475.1| unknown protein; protein id: At1g62870.1 [Arabidopsis thaliana]
Length = 796
Score = 141 bits (356), Expect = 6e-33
Identities = 69/116 (59%), Positives = 95/116 (81%)
Frame = -1
Query: 624 DPMTGKMKVANPLSSRLVWETCLCEFKSLGKIAVRLIFLHATSSGFKSNWSFMRKISANK 445
DP++GKM++ANP SSRLVWET L EF+SLG++AVRLIFLHATS GFK N S +R +++N
Sbjct: 646 DPVSGKMRIANPQSSRLVWETYLSEFRSLGRVAVRLIFLHATSCGFKCNSSVLRWVNSN- 704
Query: 444 PHSSASLERAQKMVYIAAHAKLERRDFSSEEEKDAELFAMSGSEDGMLAEVYADAT 277
S A+++RAQK+++I+A++K ERRDFS+EEE+DAEL AM+ ED +L +V D +
Sbjct: 705 GRSRAAVDRAQKLIFISANSKFERRDFSNEEERDAELLAMANGEDDVLNDVLIDTS 760
>pir||D86258 protein F5O11.10 [imported] - Arabidopsis thaliana
gi|8778648|gb|AAF79656.1|AC025416_30 F5O11.10
[Arabidopsis thaliana]
Length = 856
Score = 141 bits (355), Expect = 8e-33
Identities = 68/118 (57%), Positives = 96/118 (80%)
Frame = -1
Query: 624 DPMTGKMKVANPLSSRLVWETCLCEFKSLGKIAVRLIFLHATSSGFKSNWSFMRKISANK 445
DP++GKM++ANP SSRLVWET L EF+SLGK+AVRLIFLHAT+ GFK N S ++ +++N
Sbjct: 740 DPVSGKMRIANPQSSRLVWETYLSEFRSLGKVAVRLIFLHATTGGFKCNSSLLKWVNSN- 798
Query: 444 PHSSASLERAQKMVYIAAHAKLERRDFSSEEEKDAELFAMSGSEDGMLAEVYADATLV 271
S A+++RAQK+++I+A++K ERRDFS+EE++DAEL AM+ +D ML +V D + V
Sbjct: 799 GRSHAAVDRAQKLIFISANSKFERRDFSNEEDRDAELLAMANGDDHMLNDVLVDTSSV 856
>ref|NP_172700.1| hypothetical protein; protein id: At1g12380.1 [Arabidopsis thaliana]
Length = 793
Score = 141 bits (355), Expect = 8e-33
Identities = 68/118 (57%), Positives = 96/118 (80%)
Frame = -1
Query: 624 DPMTGKMKVANPLSSRLVWETCLCEFKSLGKIAVRLIFLHATSSGFKSNWSFMRKISANK 445
DP++GKM++ANP SSRLVWET L EF+SLGK+AVRLIFLHAT+ GFK N S ++ +++N
Sbjct: 677 DPVSGKMRIANPQSSRLVWETYLSEFRSLGKVAVRLIFLHATTGGFKCNSSLLKWVNSN- 735
Query: 444 PHSSASLERAQKMVYIAAHAKLERRDFSSEEEKDAELFAMSGSEDGMLAEVYADATLV 271
S A+++RAQK+++I+A++K ERRDFS+EE++DAEL AM+ +D ML +V D + V
Sbjct: 736 GRSHAAVDRAQKLIFISANSKFERRDFSNEEDRDAELLAMANGDDHMLNDVLVDTSSV 793
>gb|AAM01106.1|AC098682_10 Putative transposable element [Oryza sativa]
Length = 513
Score = 35.8 bits (81), Expect = 0.47
Identities = 21/72 (29%), Positives = 36/72 (49%)
Frame = -1
Query: 570 WETCLCEFKSLGKIAVRLIFLHATSSGFKSNWSFMRKISANKPHSSASLERAQKMVYIAA 391
W++ E K L +A RL+ +SSG + NWS + K + E+ K+VY+
Sbjct: 179 WDSYGGEHKELQNLARRLVSQCLSSSGCERNWSTFALVH-TKVRNRLGYEKIHKLVYVHY 237
Query: 390 HAKLERRDFSSE 355
+ KL + F ++
Sbjct: 238 NLKLRIQHFQND 249
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,771,227
Number of Sequences: 1393205
Number of extensions: 10328027
Number of successful extensions: 32436
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 29922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32039
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
