Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016485A_C01 KMC016485A_c01
(524 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB56042.1| putative nitrate transporter [Oryza sativa (japo... 42 0.003
dbj|BAB10842.1| nitrate transporter NTL1 [Arabidopsis thaliana] 39 0.028
ref|NP_201079.1| nitrate transporter NTL1 - like protein; protei... 39 0.028
pir||G96720 nitrate transporter (NTL1), 53025-56402 [imported] -... 39 0.048
pir||T51361 nitrate transporter NTL1 [validated] - Arabidopsis t... 39 0.048
>dbj|BAB56042.1| putative nitrate transporter [Oryza sativa (japonica
cultivar-group)]
Length = 614
Score = 42.4 bits (98), Expect = 0.003
Identities = 15/28 (53%), Positives = 23/28 (81%)
Frame = -1
Query: 524 FYWFLAILSCLNFFDFLYWASCYQYQSE 441
F+W LA+LS LNF ++L+WAS Y+Y+ +
Sbjct: 576 FFWLLAVLSFLNFLNYLFWASWYKYKPQ 603
>dbj|BAB10842.1| nitrate transporter NTL1 [Arabidopsis thaliana]
Length = 558
Score = 39.3 bits (90), Expect = 0.028
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = -1
Query: 524 FYWFLAILSCLNFFDFLYWASCYQYQS 444
FYW + +LS +NF +L+WAS Y Y+S
Sbjct: 529 FYWLMCVLSGINFLHYLFWASRYVYRS 555
>ref|NP_201079.1| nitrate transporter NTL1 - like protein; protein id: At5g62730.1
[Arabidopsis thaliana]
Length = 589
Score = 39.3 bits (90), Expect = 0.028
Identities = 14/27 (51%), Positives = 20/27 (73%)
Frame = -1
Query: 524 FYWFLAILSCLNFFDFLYWASCYQYQS 444
FYW + +LS +NF +L+WAS Y Y+S
Sbjct: 560 FYWLMCVLSGINFLHYLFWASRYVYRS 586
>pir||G96720 nitrate transporter (NTL1), 53025-56402 [imported] - Arabidopsis
thaliana gi|12325224|gb|AAG52554.1|AC010675_2 nitrate
transporter (NTL1); 53025-56402 [Arabidopsis thaliana]
Length = 600
Score = 38.5 bits (88), Expect = 0.048
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 524 FYWFLAILSCLNFFDFLYWASCYQYQS 444
FYW + +LS NF +L+WA Y+Y+S
Sbjct: 569 FYWLMCVLSAANFLHYLFWAMRYKYRS 595
>pir||T51361 nitrate transporter NTL1 [validated] - Arabidopsis thaliana
gi|3377517|gb|AAC28086.1| nitrate transporter NTL1
[Arabidopsis thaliana]
Length = 585
Score = 38.5 bits (88), Expect = 0.048
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -1
Query: 524 FYWFLAILSCLNFFDFLYWASCYQYQS 444
FYW + +LS NF +L+WA Y+Y+S
Sbjct: 554 FYWLMCVLSAANFLHYLFWAMRYKYRS 580
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,765,500
Number of Sequences: 1393205
Number of extensions: 10037966
Number of successful extensions: 36885
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 35440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36803
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
