>KMC016483A_C01 KMC016483A_c01
ggaaacacagaaggagatctatatattcctcaaccccaacccacacttgtggttgaaatt
agcaaatgatttcattgcatTTGCGACAGAAAAAACAATATTAAAAGCTAATATTGAAGA
ATAATAGCAGTGGTAAAGTGAATGCCAATTTGCCAATGGTATGTGAGTGATTTTGTTGTA
GCCAAAACCGTACCCCAGATTAATATTTGAGAAAGTAAAATTCAGTAGGCAAAATTATGT
AAATGCAATCAAAGGCAACGTTGCAAGATTTAGGAATGGGGTAAAAATCTATCAAATCAT
AACAGATTTCCTAAGATTCATGAGGCCTATTTCAACAGCTAGATACATCAGTTATTGCTT
CCTTCCTCTTCCTCTCTTGGCTGGTTGTGCATCCGTTTGTTCTTTCCCAGTGACTTCAGA
TAGATCCACTTCTGGTCCCCGAGCCATCAAAGTAAAGAATATATTATTCAGTTTTTCCAT
CTTCTTAGCTTCTTGTGATTGGTCTGTCTTATACTTCAGACACTGGTCAAAAACAATAAC
AATCAACTTTAGGAACATTTATATGTGAGATGTGACTCAGACGGCAATGAGAAAAGGCGA
ATAAAAGATTTTGTACAAGTGCCAGTACTACGCTTACGCTTCATACAAGTGACAAAATTC
ATATTCTATATAAGACAAATGAAGTGTG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC016483A_C01 KMC016483A_c01
         (688 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_190479.1| signal recognition particle subunit 9 - like; p...   107  1e-22
sp|O04438|SR09_MAIZE Signal recognition particle 9 kDa protein (...    97  3e-19
pdb|1E8O|A Chain A, Core Of The Alu Domain Of The Mammalian Srp ...    33  2.8
ref|NP_003124.1| signal recognition particle 9kDa; signal recogn...    33  2.8
gb|AAH17414.1|AAH17414 Similar to signal recognition particle 9k...    33  2.8

>ref|NP_190479.1| signal recognition particle subunit 9 - like; protein id:
           At3g49100.1, supported by cDNA: 14637. [Arabidopsis
           thaliana] gi|12230639|sp|Q9SMU7|SR09_ARATH Signal
           recognition particle 9 kDa protein (SRP9)
           gi|11282405|pir||T46120 signal recognition particle
           subunit 9-like - Arabidopsis thaliana
           gi|6522556|emb|CAB62000.1| signal recognition particle
           subunit 9-like [Arabidopsis thaliana]
           gi|21553473|gb|AAM62566.1| signal recognition particle 9
           kDa protein SRP9 [Arabidopsis thaliana]
           gi|28466801|gb|AAO44009.1| At3g49100 [Arabidopsis
           thaliana]
          Length = 103

 Score =  107 bits (268), Expect = 1e-22
 Identities = 53/67 (79%), Positives = 61/67 (90%), Gaps = 2/67 (2%)
 Frame = -2

Query: 549 KLIVIVFD--QCLKYKTDQSQEAKKMEKLNNIFFTLMARGPEVDLSEVTGKEQTDAQPAK 376
           KL++ V D  +CLK+KTDQ+QEAKKMEKLNNIFFTLMARGP+VDLSEVTGKEQ + QPAK
Sbjct: 37  KLVLKVTDNKECLKFKTDQAQEAKKMEKLNNIFFTLMARGPDVDLSEVTGKEQMETQPAK 96

Query: 375 RGRGRKQ 355
           +GRGRKQ
Sbjct: 97  KGRGRKQ 103

>sp|O04438|SR09_MAIZE Signal recognition particle 9 kDa protein (SRP9)
           gi|7489824|pir||T03951 signal recognition particle chain
           9 - maize gi|2208988|emb|CAA71203.1| signal recognition
           particle subunit 9 [Zea mays]
          Length = 103

 Score = 96.7 bits (239), Expect = 3e-19
 Identities = 46/67 (68%), Positives = 58/67 (85%), Gaps = 2/67 (2%)
 Frame = -2

Query: 549 KLIVIVFD--QCLKYKTDQSQEAKKMEKLNNIFFTLMARGPEVDLSEVTGKEQTDAQPAK 376
           KL++ V D  +CLK+KTDQ+Q+AKKMEKLNNIFF LM RGP+VD+SEV+GKEQ + Q AK
Sbjct: 37  KLVLKVTDDRECLKFKTDQAQDAKKMEKLNNIFFALMTRGPDVDISEVSGKEQAEQQQAK 96

Query: 375 RGRGRKQ 355
           +GRGR+Q
Sbjct: 97  KGRGRRQ 103

>pdb|1E8O|A Chain A, Core Of The Alu Domain Of The Mammalian Srp
           gi|11513834|pdb|1E8O|C Chain C, Core Of The Alu Domain
           Of The Mammalian Srp gi|11513838|pdb|1E8S|A Chain A, Alu
           Domain Of The Mammalian Srp (Potential Alu Retroposition
           Intermediate)
          Length = 85

 Score = 33.5 bits (75), Expect = 2.8
 Identities = 14/26 (53%), Positives = 19/26 (72%)
 Frame = -2

Query: 522 CLKYKTDQSQEAKKMEKLNNIFFTLM 445
           CL YKTDQ+Q+ KK+EK ++    LM
Sbjct: 47  CLVYKTDQAQDVKKIEKFHSQLMRLM 72

>ref|NP_003124.1| signal recognition particle 9kDa; signal recognition particle 9kD
           [Homo sapiens] gi|1351111|sp|P49458|SR09_HUMAN Signal
           recognition particle 9 kDa protein (SRP9)
           gi|1362938|pir||A57292 signal recognition particle
           protein SRP9 - human gi|897851|gb|AAA70170.1| signal
           recognition particle subunit 9
           gi|14250077|gb|AAH08443.1|AAH08443 signal recognition
           particle 9kD [Homo sapiens] gi|15722108|emb|CAC78761.1|
           bA251A15.3 (signal recognition particle 9kD) [Homo
           sapiens] gi|15929315|gb|AAH15094.1|AAH15094 signal
           recognition particle 9kD [Homo sapiens]
           gi|18490251|gb|AAH22415.1| signal recognition particle
           9kD [Homo sapiens]
          Length = 86

 Score = 33.5 bits (75), Expect = 2.8
 Identities = 14/26 (53%), Positives = 19/26 (72%)
 Frame = -2

Query: 522 CLKYKTDQSQEAKKMEKLNNIFFTLM 445
           CL YKTDQ+Q+ KK+EK ++    LM
Sbjct: 48  CLVYKTDQAQDVKKIEKFHSQLMRLM 73

>gb|AAH17414.1|AAH17414 Similar to signal recognition particle 9kD [Homo sapiens]
          Length = 45

 Score = 33.5 bits (75), Expect = 2.8
 Identities = 14/26 (53%), Positives = 19/26 (72%)
 Frame = -2

Query: 522 CLKYKTDQSQEAKKMEKLNNIFFTLM 445
           CL YKTDQ+Q+ KK+EK ++    LM
Sbjct: 7   CLVYKTDQAQDVKKIEKFHSQLMRLM 32

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 564,344,648
Number of Sequences: 1393205
Number of extensions: 11680661
Number of successful extensions: 24538
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 23893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24536
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 SPDL043c06_f BP054701 1 512 2 SPDL014e05_f BP052870 145 688 3 MFB072f12_f BP039262 159 296

---