KMC016482A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC016482A_C01 KMC016482A_c01
cgttaacattcacttgagacaaaaagtgaacggatttctctcgatagattgagaaaaaag
cgaaacatatgattgaccacATTCGTTAATGTTCAATGTTCCAAAAAAAAGAAGGAACGG
GAATAAGAAAGGTTACAACATTTCAGGATATTTAACACTAAATCATGAATACTTATGTGG
AACCATGTTAATATGTTATGCATTTCATAGAAATTAAAATACGTCCATCATGGAATTCTT
GGGTTTCTTGTCTATAGAGGAAAAAAAACCTTTTTATCAAACAAAAGTTCATAGAGGTAG
CTGTTTGTACTCTGCCAAAAGTTTCGGAACATCATCCATGCGCAACTGAGAAACACTTTT
GACATGGTAAAATTGATGCATCACATGTTCACCAAATCCAGGTTGCTGGTCAGAGGCACT
TCTTTCTATATGGTGCCGGTGAATTAGACGTTGGTAATCCCGAAGCAAAGGTCCAAGCTC
TTTGAGTTTAACCATATTAGATTCAGTCTTCTTCCAGTGTTCACGAAGTCCTTCAATnGC
CAGGGAATTTGCTGAAACTTCGTCACCTGCCAATCTCGATGCTAATTCAAGAAGCTCTTT
ATCGTCCAACTCATTCACAATnGGAAGCCTGGAATTGGATGGTGAAACTGATATTTGCAA
TCTTCTTTGCAATTCTGAGAAATGAAATTTCT


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC016482A_C01 KMC016482A_c01
         (692 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G84779 hypothetical protein At2g36360 [imported] - Arabidop...    95  8e-19
ref|NP_181177.2| unknown protein; protein id: At2g36360.1, suppo...    95  8e-19
ref|NP_702511.1| hypothetical protein [Plasmodium falciparum 3D7...    36  0.44
gb|AAC51632.1| beta4-integrin [Homo sapiens]                           33  4.9
gb|AAC51634.1| beta4-integrin [Homo sapiens]                           33  4.9

>pir||G84779 hypothetical protein At2g36360 [imported] - Arabidopsis thaliana
           gi|4510341|gb|AAD21430.1| unknown protein [Arabidopsis
           thaliana]
          Length = 469

 Score = 95.1 bits (235), Expect = 8e-19
 Identities = 58/136 (42%), Positives = 82/136 (59%), Gaps = 6/136 (4%)
 Frame = -3

Query: 687 FHFSELQRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEV-----SANSLAIEGLR 523
           F   +LQ+++ ISVS S  RL I  E +D+E +EL +RL   +V     S   +A + LR
Sbjct: 333 FSIVDLQQKMGISVS-SGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALR 391

Query: 522 EHWKKTESNMVKLKELGPLLRDYQRLIHR-HHIERSASDQQPGFGEHVMHQFYHVKSVSQ 346
           +HWK++    ++LKELG LLRDYQRL+ R    + S +    G        FYH+KS S+
Sbjct: 392 QHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSE 451

Query: 345 LRMDDVPKLLAEYKQL 298
           LR++D+ KLL EYK L
Sbjct: 452 LRINDISKLLEEYKTL 467

>ref|NP_181177.2| unknown protein; protein id: At2g36360.1, supported by cDNA:
           gi_20260247 [Arabidopsis thaliana]
           gi|20260248|gb|AAM13022.1| unknown protein [Arabidopsis
           thaliana] gi|22136502|gb|AAM91329.1| unknown protein
           [Arabidopsis thaliana]
          Length = 496

 Score = 95.1 bits (235), Expect = 8e-19
 Identities = 58/136 (42%), Positives = 82/136 (59%), Gaps = 6/136 (4%)
 Frame = -3

Query: 687 FHFSELQRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEV-----SANSLAIEGLR 523
           F   +LQ+++ ISVS S  RL I  E +D+E +EL +RL   +V     S   +A + LR
Sbjct: 360 FSIVDLQQKMGISVS-SGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALR 418

Query: 522 EHWKKTESNMVKLKELGPLLRDYQRLIHR-HHIERSASDQQPGFGEHVMHQFYHVKSVSQ 346
           +HWK++    ++LKELG LLRDYQRL+ R    + S +    G        FYH+KS S+
Sbjct: 419 QHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSE 478

Query: 345 LRMDDVPKLLAEYKQL 298
           LR++D+ KLL EYK L
Sbjct: 479 LRINDISKLLEEYKTL 494

>ref|NP_702511.1| hypothetical protein [Plasmodium falciparum 3D7]
           gi|23497696|gb|AAN37235.1|AE014826_34 hypothetical
           protein [Plasmodium falciparum 3D7]
          Length = 1495

 Score = 36.2 bits (82), Expect = 0.44
 Identities = 35/127 (27%), Positives = 65/127 (50%), Gaps = 6/127 (4%)
 Frame = -1

Query: 410 TSNLDLVNM*CINFTMSKVFLSCAWMMFRNFWQSTNSYLYE---LLFDKKV---FFPL*T 249
           TS +DLV M  I++  SK +L  + ++   F+ +  +YL+     +F+ ++   F     
Sbjct: 227 TSYIDLV-MVIISYNKSKYYLMKSKLLIDIFFSAPCTYLFSKFIFVFEHQIDIYFMMGFL 285

Query: 248 RNPRIP*WTYFNFYEMHNILTWFHISIHDLVLNILKCCNLSYSRSFFFLEH*TLTNVVNH 69
           RN +I     +   E ++ILT   I I  +VL +L  CN +++ + + ++     N+ N 
Sbjct: 286 RNIKIFLNVSYVRIEHNSILTNTEIKIIRIVLGVLLLCN-AFASTIYTIQAIHPYNLDNE 344

Query: 68  MFRFFLN 48
            F +FLN
Sbjct: 345 NFNYFLN 351

>gb|AAC51632.1| beta4-integrin [Homo sapiens]
          Length = 1752

 Score = 32.7 bits (73), Expect = 4.9
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
 Frame = -3

Query: 669  QRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEVSANS--LAIEGLR-----EHWK 511
            Q    +S     +R+P++  + D    +++ R        N   + +EG       E WK
Sbjct: 996  QPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQPGEAWK 1055

Query: 510  KTESNMVKLKELGPLLRDYQRLIHRHHIERSASDQQPGFGEHV 382
            + +  +++L+E+  LLR   R + R H++ S     P FG H+
Sbjct: 1056 ELQVKLLELQEVDSLLRG--RQVRRFHVQLS----NPKFGAHL 1092

>gb|AAC51634.1| beta4-integrin [Homo sapiens]
          Length = 1805

 Score = 32.7 bits (73), Expect = 4.9
 Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
 Frame = -3

Query: 669  QRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEVSANS--LAIEGLR-----EHWK 511
            Q    +S     +R+P++  + D    +++ R        N   + +EG       E WK
Sbjct: 996  QPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQPGEAWK 1055

Query: 510  KTESNMVKLKELGPLLRDYQRLIHRHHIERSASDQQPGFGEHV 382
            + +  +++L+E+  LLR   R + R H++ S     P FG H+
Sbjct: 1056 ELQVKLLELQEVDSLLRG--RQVRRFHVQLS----NPKFGAHL 1092

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,416,602
Number of Sequences: 1393205
Number of extensions: 12066296
Number of successful extensions: 43238
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 41907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43197
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPDL048c10_f BP055001 1 469
2 SPDL011g10_f BP052687 127 692




Lotus japonicus
Kazusa DNA Research Institute