KMC016482A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KMC016482A_C01 KMC016482A_c01
cgttaacattcacttgagacaaaaagtgaacggatttctctcgatagattgagaaaaaag
cgaaacatatgattgaccacATTCGTTAATGTTCAATGTTCCAAAAAAAAGAAGGAACGG
GAATAAGAAAGGTTACAACATTTCAGGATATTTAACACTAAATCATGAATACTTATGTGG
AACCATGTTAATATGTTATGCATTTCATAGAAATTAAAATACGTCCATCATGGAATTCTT
GGGTTTCTTGTCTATAGAGGAAAAAAAACCTTTTTATCAAACAAAAGTTCATAGAGGTAG
CTGTTTGTACTCTGCCAAAAGTTTCGGAACATCATCCATGCGCAACTGAGAAACACTTTT
GACATGGTAAAATTGATGCATCACATGTTCACCAAATCCAGGTTGCTGGTCAGAGGCACT
TCTTTCTATATGGTGCCGGTGAATTAGACGTTGGTAATCCCGAAGCAAAGGTCCAAGCTC
TTTGAGTTTAACCATATTAGATTCAGTCTTCTTCCAGTGTTCACGAAGTCCTTCAATnGC
CAGGGAATTTGCTGAAACTTCGTCACCTGCCAATCTCGATGCTAATTCAAGAAGCTCTTT
ATCGTCCAACTCATTCACAATnGGAAGCCTGGAATTGGATGGTGAAACTGATATTTGCAA
TCTTCTTTGCAATTCTGAGAAATGAAATTTCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016482A_C01 KMC016482A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||G84779 hypothetical protein At2g36360 [imported] - Arabidop... 95 8e-19
ref|NP_181177.2| unknown protein; protein id: At2g36360.1, suppo... 95 8e-19
ref|NP_702511.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.44
gb|AAC51632.1| beta4-integrin [Homo sapiens] 33 4.9
gb|AAC51634.1| beta4-integrin [Homo sapiens] 33 4.9
>pir||G84779 hypothetical protein At2g36360 [imported] - Arabidopsis thaliana
gi|4510341|gb|AAD21430.1| unknown protein [Arabidopsis
thaliana]
Length = 469
Score = 95.1 bits (235), Expect = 8e-19
Identities = 58/136 (42%), Positives = 82/136 (59%), Gaps = 6/136 (4%)
Frame = -3
Query: 687 FHFSELQRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEV-----SANSLAIEGLR 523
F +LQ+++ ISVS S RL I E +D+E +EL +RL +V S +A + LR
Sbjct: 333 FSIVDLQQKMGISVS-SGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALR 391
Query: 522 EHWKKTESNMVKLKELGPLLRDYQRLIHR-HHIERSASDQQPGFGEHVMHQFYHVKSVSQ 346
+HWK++ ++LKELG LLRDYQRL+ R + S + G FYH+KS S+
Sbjct: 392 QHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSE 451
Query: 345 LRMDDVPKLLAEYKQL 298
LR++D+ KLL EYK L
Sbjct: 452 LRINDISKLLEEYKTL 467
>ref|NP_181177.2| unknown protein; protein id: At2g36360.1, supported by cDNA:
gi_20260247 [Arabidopsis thaliana]
gi|20260248|gb|AAM13022.1| unknown protein [Arabidopsis
thaliana] gi|22136502|gb|AAM91329.1| unknown protein
[Arabidopsis thaliana]
Length = 496
Score = 95.1 bits (235), Expect = 8e-19
Identities = 58/136 (42%), Positives = 82/136 (59%), Gaps = 6/136 (4%)
Frame = -3
Query: 687 FHFSELQRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEV-----SANSLAIEGLR 523
F +LQ+++ ISVS S RL I E +D+E +EL +RL +V S +A + LR
Sbjct: 360 FSIVDLQQKMGISVS-SGLRLQIPEESEDQEFVELGTRLIEGDVVDERASMIQMAAQALR 418
Query: 522 EHWKKTESNMVKLKELGPLLRDYQRLIHR-HHIERSASDQQPGFGEHVMHQFYHVKSVSQ 346
+HWK++ ++LKELG LLRDYQRL+ R + S + G FYH+KS S+
Sbjct: 419 QHWKQSTPRTLQLKELGSLLRDYQRLVTRIFTTQSSLTSADFGLPGTKTFTFYHIKSSSE 478
Query: 345 LRMDDVPKLLAEYKQL 298
LR++D+ KLL EYK L
Sbjct: 479 LRINDISKLLEEYKTL 494
>ref|NP_702511.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497696|gb|AAN37235.1|AE014826_34 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1495
Score = 36.2 bits (82), Expect = 0.44
Identities = 35/127 (27%), Positives = 65/127 (50%), Gaps = 6/127 (4%)
Frame = -1
Query: 410 TSNLDLVNM*CINFTMSKVFLSCAWMMFRNFWQSTNSYLYE---LLFDKKV---FFPL*T 249
TS +DLV M I++ SK +L + ++ F+ + +YL+ +F+ ++ F
Sbjct: 227 TSYIDLV-MVIISYNKSKYYLMKSKLLIDIFFSAPCTYLFSKFIFVFEHQIDIYFMMGFL 285
Query: 248 RNPRIP*WTYFNFYEMHNILTWFHISIHDLVLNILKCCNLSYSRSFFFLEH*TLTNVVNH 69
RN +I + E ++ILT I I +VL +L CN +++ + + ++ N+ N
Sbjct: 286 RNIKIFLNVSYVRIEHNSILTNTEIKIIRIVLGVLLLCN-AFASTIYTIQAIHPYNLDNE 344
Query: 68 MFRFFLN 48
F +FLN
Sbjct: 345 NFNYFLN 351
>gb|AAC51632.1| beta4-integrin [Homo sapiens]
Length = 1752
Score = 32.7 bits (73), Expect = 4.9
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Frame = -3
Query: 669 QRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEVSANS--LAIEGLR-----EHWK 511
Q +S +R+P++ + D +++ R N + +EG E WK
Sbjct: 996 QPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQPGEAWK 1055
Query: 510 KTESNMVKLKELGPLLRDYQRLIHRHHIERSASDQQPGFGEHV 382
+ + +++L+E+ LLR R + R H++ S P FG H+
Sbjct: 1056 ELQVKLLELQEVDSLLRG--RQVRRFHVQLS----NPKFGAHL 1092
>gb|AAC51634.1| beta4-integrin [Homo sapiens]
Length = 1805
Score = 32.7 bits (73), Expect = 4.9
Identities = 25/103 (24%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Frame = -3
Query: 669 QRRLQISVSPSNSRLPIVNELDDKELLELASRLAGDEVSANS--LAIEGLR-----EHWK 511
Q +S +R+P++ + D +++ R N + +EG E WK
Sbjct: 996 QPEFSVSRGDQVARIPVIRRVLDGGKSQVSYRTQDGTAQGNRDYIPVEGELLFQPGEAWK 1055
Query: 510 KTESNMVKLKELGPLLRDYQRLIHRHHIERSASDQQPGFGEHV 382
+ + +++L+E+ LLR R + R H++ S P FG H+
Sbjct: 1056 ELQVKLLELQEVDSLLRG--RQVRRFHVQLS----NPKFGAHL 1092
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,416,602
Number of Sequences: 1393205
Number of extensions: 12066296
Number of successful extensions: 43238
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 41907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43197
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
EST assemble image
|
|
|
|
clone |
accession |
position |
1 |
SPDL048c10_f |
BP055001 |
1 |
469 |
2 |
SPDL011g10_f |
BP052687 |
127 |
692 |
|
Lotus japonicus
Kazusa DNA Research Institute