Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016480A_C01 KMC016480A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_504629.1| Putative cytoplasmic protein, with a coiled coi... 34 1.2
pir||T31902 hypothetical protein T05H4.10 - Caenorhabditis elegans 34 1.2
ref|NP_068324.1| PxORF105 peptide [Plutella xylostella granulovi... 33 2.0
sp|P22182|FGR1_XENLA Fibroblast growth factor receptor 1 precurs... 33 2.6
pir||A39752 fibroblast growth factor receptor A1 precursor - Afr... 32 5.7
>ref|NP_504629.1| Putative cytoplasmic protein, with a coiled coil domain, of
eukaryotic origin (54.8 kD) [Caenorhabditis elegans]
gi|21106019|gb|AAB66016.2| Hypothetical protein T05H4.10
[Caenorhabditis elegans]
Length = 476
Score = 34.3 bits (77), Expect = 1.2
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Frame = -3
Query: 475 TPYNVKPINYVALNCFLRDKKEKVNQVKGVLWFFK*FLKPSSSILYP-YLEYGLFLFVVN 299
T Y+V+P+ + EK+ V+ VL FF L P+SS+ ++E+ + +
Sbjct: 135 TKYHVRPLT--------EENSEKIYDVRFVLRFFNSILHPASSLTSKLFVEHNCLALLFS 186
Query: 298 *ACKSKSS----GLSCLMKF*TLCSFQFLSEWKKEELNFVIFIAPNFAGYLQWRTLFRSF 131
S SS +CL KF +ELN IF Y L R F
Sbjct: 187 CTSSSDSSVRTLAFACLQKFVN----------HLQELNTEIFAEKALILY-----LIRIF 231
Query: 130 PCHDDSSVKQIFLWVEYLFVQV 65
DSSV ++ + + F +V
Sbjct: 232 KHGFDSSVPRVSSIITHFFARV 253
>pir||T31902 hypothetical protein T05H4.10 - Caenorhabditis elegans
Length = 436
Score = 34.3 bits (77), Expect = 1.2
Identities = 38/142 (26%), Positives = 58/142 (40%), Gaps = 5/142 (3%)
Frame = -3
Query: 475 TPYNVKPINYVALNCFLRDKKEKVNQVKGVLWFFK*FLKPSSSILYP-YLEYGLFLFVVN 299
T Y+V+P+ + EK+ V+ VL FF L P+SS+ ++E+ + +
Sbjct: 135 TKYHVRPLT--------EENSEKIYDVRFVLRFFNSILHPASSLTSKLFVEHNCLALLFS 186
Query: 298 *ACKSKSS----GLSCLMKF*TLCSFQFLSEWKKEELNFVIFIAPNFAGYLQWRTLFRSF 131
S SS +CL KF +ELN IF Y L R F
Sbjct: 187 CTSSSDSSVRTLAFACLQKFVN----------HLQELNTEIFAEKALILY-----LIRIF 231
Query: 130 PCHDDSSVKQIFLWVEYLFVQV 65
DSSV ++ + + F +V
Sbjct: 232 KHGFDSSVPRVSSIITHFFARV 253
>ref|NP_068324.1| PxORF105 peptide [Plutella xylostella granulovirus]
gi|11036900|gb|AAG27403.1|AF270937_105 PxORF105 peptide
[Plutella xylostella granulovirus]
Length = 402
Score = 33.5 bits (75), Expect = 2.0
Identities = 14/39 (35%), Positives = 25/39 (63%)
Frame = -3
Query: 439 LNCFLRDKKEKVNQVKGVLWFFK*FLKPSSSILYPYLEY 323
+NC + D+ E N+++ LW+ L+PSSS + Y+E+
Sbjct: 360 INCHMPDRVEAANKIR--LWWLNILLEPSSSYIRKYIEH 396
>sp|P22182|FGR1_XENLA Fibroblast growth factor receptor 1 precursor gi|104044|pir||A36477
fibroblast growth factor receptor A2 precursor - African
clawed frog gi|857678|gb|AAA86868.1| fibroblast growth
factor receptor-1
Length = 812
Score = 33.1 bits (74), Expect = 2.6
Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 7/62 (11%)
Frame = -3
Query: 556 SLLWWYVKFNA-------PAVL*NEIAFDIFLHLTPYNVKPINYVALNCFLRDKKEKVNQ 398
SLL W V A P+ L +E+A + PY+ +P + + L C LR+ + +N
Sbjct: 6 SLLLWGVLLGAALSVARPPSTLPDEVAPKTKTEVEPYSAQPGDRITLQCRLREDVQSINW 65
Query: 397 VK 392
VK
Sbjct: 66 VK 67
>pir||A39752 fibroblast growth factor receptor A1 precursor - African clawed
frog gi|214894|gb|AAA49990.1| fibroblast growth factor
receptor
Length = 814
Score = 32.0 bits (71), Expect = 5.7
Identities = 20/62 (32%), Positives = 31/62 (49%), Gaps = 7/62 (11%)
Frame = -3
Query: 556 SLLWWYVKFNA-------PAVL*NEIAFDIFLHLTPYNVKPINYVALNCFLRDKKEKVNQ 398
SLL W V A P+ L +E+A + PY+ +P + V L C LR+ + ++
Sbjct: 6 SLLLWGVLLGAALSVARPPSTLPDEVAPKTKTEVEPYSARPGDTVTLQCRLREDVQSISW 65
Query: 397 VK 392
VK
Sbjct: 66 VK 67
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,098,551
Number of Sequences: 1393205
Number of extensions: 9200950
Number of successful extensions: 16847
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16846
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
