Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016479A_C01 KMC016479A_c01
(454 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195908.1| putative protein; protein id: At5g02880.1 [Arab... 56 1e-07
ref|NP_195572.1| putative protein; protein id: At4g38600.1 [Arab... 50 1e-05
pir||T06977 hypothetical protein Tap - wheat (fragment) gi|16676... 50 1e-05
ref|NP_611896.1| CG3356-PA [Drosophila melanogaster] gi|7291760|... 38 0.054
ref|NP_004229.1| thyroid hormone receptor interactor 12; thyroid... 36 0.16
>ref|NP_195908.1| putative protein; protein id: At5g02880.1 [Arabidopsis thaliana]
gi|11357909|pir||T48309 hypothetical protein F9G14.190 -
Arabidopsis thaliana gi|7413563|emb|CAB86042.1| putative
protein [Arabidopsis thaliana]
Length = 1502
Score = 56.2 bits (134), Expect = 1e-07
Identities = 26/29 (89%), Positives = 28/29 (95%)
Frame = -1
Query: 454 KLPPYSTKEKMKEKLLYAITEGQGSFPLS 368
KLPPYS+KEKMKEKL+YAITEGQGSF LS
Sbjct: 1474 KLPPYSSKEKMKEKLIYAITEGQGSFHLS 1502
>ref|NP_195572.1| putative protein; protein id: At4g38600.1 [Arabidopsis thaliana]
gi|7485881|pir||T05688 hypothetical protein F20M13.160 -
Arabidopsis thaliana gi|4467147|emb|CAB37516.1| putative
protein [Arabidopsis thaliana]
gi|7270843|emb|CAB80524.1| putative protein [Arabidopsis
thaliana]
Length = 757
Score = 49.7 bits (117), Expect = 1e-05
Identities = 24/29 (82%), Positives = 25/29 (85%)
Frame = -1
Query: 454 KLPPYSTKEKMKEKLLYAITEGQGSFPLS 368
KLPPYSTKE M +KLLYAI EGQGSF LS
Sbjct: 729 KLPPYSTKEIMYKKLLYAINEGQGSFDLS 757
>pir||T06977 hypothetical protein Tap - wheat (fragment)
gi|1667607|gb|AAB18822.1| Tap [Triticum aestivum]
Length = 94
Score = 49.7 bits (117), Expect = 1e-05
Identities = 23/29 (79%), Positives = 26/29 (89%)
Frame = -1
Query: 454 KLPPYSTKEKMKEKLLYAITEGQGSFPLS 368
KLPPYSTKE M++KLLYAI EG+GSF LS
Sbjct: 66 KLPPYSTKEVMRKKLLYAILEGRGSFDLS 94
>ref|NP_611896.1| CG3356-PA [Drosophila melanogaster] gi|7291760|gb|AAF47181.1|
CG3356-PA [Drosophila melanogaster]
gi|17862788|gb|AAL39871.1| LP03102p [Drosophila
melanogaster]
Length = 1122
Score = 37.7 bits (86), Expect = 0.054
Identities = 19/29 (65%), Positives = 22/29 (75%)
Frame = -1
Query: 454 KLPPYSTKEKMKEKLLYAITEGQGSFPLS 368
KLPP+ T E+M+EKLLYAI G G F LS
Sbjct: 1095 KLPPFKTVEQMREKLLYAIQSGAG-FELS 1122
>ref|NP_004229.1| thyroid hormone receptor interactor 12; thyroid receptor interacting
protein 12 [Homo sapiens] gi|2499839|sp|Q14669|TRIB_HUMAN
Thyroid receptor interacting protein 12 (TRIP12)
gi|460711|dbj|BAA05837.1| KIAA0045 [Homo sapiens]
Length = 1992
Score = 36.2 bits (82), Expect = 0.16
Identities = 19/29 (65%), Positives = 21/29 (71%)
Frame = -1
Query: 454 KLPPYSTKEKMKEKLLYAITEGQGSFPLS 368
KLP YS+ E M+EKLL A EGQ SF LS
Sbjct: 1964 KLPDYSSIEIMREKLLIAAREGQQSFHLS 1992
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 414,247,861
Number of Sequences: 1393205
Number of extensions: 8840523
Number of successful extensions: 17938
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 17551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17934
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
