Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016478A_C01 KMC016478A_c01
(771 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P53535|PHS2_SOLTU Alpha-1,4 glucan phosphorylase, L-2 isozyme... 249 2e-65
gb|AAK16190.1|AC079887_22 putative phosphorylase [Oryza sativa] 246 3e-64
gb|AAK15695.1|AF327055_1 alpha 1,4-glucan phosphorylase L isozym... 246 3e-64
sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase, L isozyme, ... 244 8e-64
pir||S47243 starch phosphorylase (EC 2.4.1.1) isoform L precurso... 244 8e-64
>sp|P53535|PHS2_SOLTU Alpha-1,4 glucan phosphorylase, L-2 isozyme, chloroplast precursor
(Starch phosphorylase L-2) gi|421957|pir||S34189 starch
phosphorylase (EC 2.4.1.1) L - potato
gi|313349|emb|CAA52036.1| starch phosphorylase [Solanum
tuberosum]
Length = 974
Score = 249 bits (637), Expect = 2e-65
Identities = 115/135 (85%), Positives = 130/135 (96%)
Frame = -3
Query: 769 IREEVGEENFFLFGARAQEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGPYNYDDLMG 590
IREEVGE+NFFLFGA+A EIAGLRKERAEGKFVPDPRFEEVKA++R+GVFG YNY++LMG
Sbjct: 839 IREEVGEDNFFLFGAQAHEIAGLRKERAEGKFVPDPRFEEVKAFIRTGVFGTYNYEELMG 898
Query: 589 SLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKRWTRMSILNTAGSYKFSSDRTI 410
SLEGNEGYGRADYFLVGKDFP Y+ECQ++VD+AYRDQK+WT+MSILNTAGS+KFSSDRTI
Sbjct: 899 SLEGNEGYGRADYFLVGKDFPDYIECQDKVDEAYRDQKKWTKMSILNTAGSFKFSSDRTI 958
Query: 409 SEYARDIWRIEPVAL 365
+YARDIWRIEPV L
Sbjct: 959 HQYARDIWRIEPVEL 973
>gb|AAK16190.1|AC079887_22 putative phosphorylase [Oryza sativa]
Length = 951
Score = 246 bits (628), Expect = 3e-64
Identities = 118/135 (87%), Positives = 125/135 (92%)
Frame = -3
Query: 769 IREEVGEENFFLFGARAQEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGPYNYDDLMG 590
IREEVGEENFFLFGA A EIAGLRKERA+GKFVPDPRFEEVK +VRSGVFG YNYDDLMG
Sbjct: 816 IREEVGEENFFLFGAEAHEIAGLRKERAQGKFVPDPRFEEVKRFVRSGVFGTYNYDDLMG 875
Query: 589 SLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKRWTRMSILNTAGSYKFSSDRTI 410
SLEGNEGYGRADYFLVGKDFPSY+ECQE+VDKAYRDQK WTRMSILNTA S KF+SDRTI
Sbjct: 876 SLEGNEGYGRADYFLVGKDFPSYIECQEKVDKAYRDQKLWTRMSILNTASSSKFNSDRTI 935
Query: 409 SEYARDIWRIEPVAL 365
EYA+DIW I+PV L
Sbjct: 936 HEYAKDIWDIKPVIL 950
>gb|AAK15695.1|AF327055_1 alpha 1,4-glucan phosphorylase L isozyme; alpha glucan phosphorylase
[Oryza sativa]
Length = 928
Score = 246 bits (628), Expect = 3e-64
Identities = 118/135 (87%), Positives = 125/135 (92%)
Frame = -3
Query: 769 IREEVGEENFFLFGARAQEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGPYNYDDLMG 590
IREEVGEENFFLFGA A EIAGLRKERA+GKFVPDPRFEEVK +VRSGVFG YNYDDLMG
Sbjct: 793 IREEVGEENFFLFGAEAHEIAGLRKERAQGKFVPDPRFEEVKRFVRSGVFGTYNYDDLMG 852
Query: 589 SLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKRWTRMSILNTAGSYKFSSDRTI 410
SLEGNEGYGRADYFLVGKDFPSY+ECQE+VDKAYRDQK WTRMSILNTA S KF+SDRTI
Sbjct: 853 SLEGNEGYGRADYFLVGKDFPSYIECQEKVDKAYRDQKLWTRMSILNTASSSKFNSDRTI 912
Query: 409 SEYARDIWRIEPVAL 365
EYA+DIW I+PV L
Sbjct: 913 HEYAKDIWDIKPVIL 927
>sp|P53536|PHSL_VICFA Alpha-1,4 glucan phosphorylase, L isozyme, chloroplast precursor
(Starch phosphorylase L) gi|1616637|emb|CAA85354.1|
alpha-1,4 Glucan Phosphorylase, L isoform precursor
[Vicia faba]
Length = 1003
Score = 244 bits (624), Expect = 8e-64
Identities = 116/135 (85%), Positives = 126/135 (92%)
Frame = -3
Query: 769 IREEVGEENFFLFGARAQEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGPYNYDDLMG 590
IREEVG +NFFLFGA+A+EI GLRKERA GKFVPDPRFEEVK +VRSGVFG YNYD+L+G
Sbjct: 868 IREEVGADNFFLFGAKAREIVGLRKERARGKFVPDPRFEEVKKFVRSGVFGSYNYDELIG 927
Query: 589 SLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKRWTRMSILNTAGSYKFSSDRTI 410
SLEGNEG+GRADYFLVG+DFPSYLECQEEVDKAYRDQK+WTRMSILNTAGS KFSSDRTI
Sbjct: 928 SLEGNEGFGRADYFLVGQDFPSYLECQEEVDKAYRDQKKWTRMSILNTAGSSKFSSDRTI 987
Query: 409 SEYARDIWRIEPVAL 365
EYAR+IW IEPV L
Sbjct: 988 HEYAREIWNIEPVKL 1002
>pir||S47243 starch phosphorylase (EC 2.4.1.1) isoform L precursor, chloroplast -
fava bean
Length = 1000
Score = 244 bits (624), Expect = 8e-64
Identities = 116/135 (85%), Positives = 126/135 (92%)
Frame = -3
Query: 769 IREEVGEENFFLFGARAQEIAGLRKERAEGKFVPDPRFEEVKAYVRSGVFGPYNYDDLMG 590
IREEVG +NFFLFGA+A+EI GLRKERA GKFVPDPRFEEVK +VRSGVFG YNYD+L+G
Sbjct: 865 IREEVGADNFFLFGAKAREIVGLRKERARGKFVPDPRFEEVKKFVRSGVFGSYNYDELIG 924
Query: 589 SLEGNEGYGRADYFLVGKDFPSYLECQEEVDKAYRDQKRWTRMSILNTAGSYKFSSDRTI 410
SLEGNEG+GRADYFLVG+DFPSYLECQEEVDKAYRDQK+WTRMSILNTAGS KFSSDRTI
Sbjct: 925 SLEGNEGFGRADYFLVGQDFPSYLECQEEVDKAYRDQKKWTRMSILNTAGSSKFSSDRTI 984
Query: 409 SEYARDIWRIEPVAL 365
EYAR+IW IEPV L
Sbjct: 985 HEYAREIWNIEPVKL 999
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 605,626,366
Number of Sequences: 1393205
Number of extensions: 12728697
Number of successful extensions: 29144
Number of sequences better than 10.0: 194
Number of HSP's better than 10.0 without gapping: 27834
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28942
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37815044670
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
