Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016475A_C01 KMC016475A_c01
(516 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177056.1| hypothetical protein; protein id: At1g68900.1 [... 109 2e-23
ref|NP_347414.1| ATP-dependent RNA helicase, superfamily II [Clo... 34 0.87
gb|AAL77697.1| AT5g20480/F7C8_70 [Arabidopsis thaliana] gi|29028... 32 5.6
ref|NP_197548.1| leucine-rich repeat transmembrane protein kinas... 32 5.6
gb|AAK55470.1|AC084295_3 putative phosphoinositide kinase [Oryza... 32 5.6
>ref|NP_177056.1| hypothetical protein; protein id: At1g68900.1 [Arabidopsis
thaliana] gi|25404785|pir||E96713 hypothetical protein
T6L1.8 [imported] - Arabidopsis thaliana
gi|12323221|gb|AAG51593.1|AC011665_14 hypothetical
protein [Arabidopsis thaliana]
Length = 656
Score = 109 bits (273), Expect = 2e-23
Identities = 60/139 (43%), Positives = 83/139 (59%)
Frame = -1
Query: 516 GKMXVVSAAFESSLSLAAYTQFSSYLEILRLSTFKVLNYKEEPSVAHGLGTYSWLKEDVT 337
GKM V+SAA+ES L L+AY F+SYLE+ + PSVAHGLGTY WL EDV
Sbjct: 249 GKMAVISAAYESGLGLSAYILFASYLEMENVKASTEQKQGTPPSVAHGLGTYRWLSEDVM 308
Query: 336 PNPLFVGPNPLSGFVEASVANASRVLHNFEVNQNVICNMITGEPICQYPLKVEHNHLSCS 157
N L + +P SGFVE +A+ASR L + ++N +VI G P+ +Y L+V+ + S
Sbjct: 309 MNTLGIFRSPYSGFVEGFIADASRNLKDVKINNDVIVRTSKGIPVRRYELRVDVDGFSHF 368
Query: 156 FEVREVGLKSNVSKEVSIH 100
V +VG + S + +H
Sbjct: 369 IRVHDVGENAEGSVALFLH 387
>ref|NP_347414.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum] gi|25500519|pir||G96995 ATP-dependent
RNA helicase, superfamily II [imported] - Clostridium
acetobutylicum gi|15023664|gb|AAK78754.1|AE007593_2
ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum]
Length = 585
Score = 34.3 bits (77), Expect = 0.87
Identities = 23/61 (37%), Positives = 35/61 (56%), Gaps = 2/61 (3%)
Frame = -1
Query: 261 LHNFEV--NQNVICNMITGEPICQYPLKVEHNHLSCSFEVREVGLKSNVSKEVSIHIKNI 88
L NFE N+ +IC+++TGE + LK + H+SC+ E +V LK + V I+ I
Sbjct: 180 LENFEKLNNEGIICDLLTGE---EEILKPDSTHISCTIE--KVDLKEHYDIAVIDEIQMI 234
Query: 87 S 85
S
Sbjct: 235 S 235
>gb|AAL77697.1| AT5g20480/F7C8_70 [Arabidopsis thaliana] gi|29028752|gb|AAO64755.1|
At5g20480/F7C8_70 [Arabidopsis thaliana]
Length = 1031
Score = 31.6 bits (70), Expect = 5.6
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Frame = -1
Query: 327 LFVGPNPLSGFVEASVANASRVLHNFEVNQNVICNMI---TGEPICQYPLKVEHNHLSCS 157
L VG N L G + AS+AN S L + + QN+I I G + L +E N LS
Sbjct: 349 LDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGE 408
Query: 156 FEV--------REVGLKSN-VSKEVSIHIKNIS*ILKV 70
V + V L SN +S E+ + N++ + K+
Sbjct: 409 LPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446
>ref|NP_197548.1| leucine-rich repeat transmembrane protein kinase, putative; protein
id: At5g20480.1, supported by cDNA: gi_18700170
[Arabidopsis thaliana]
Length = 1031
Score = 31.6 bits (70), Expect = 5.6
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 12/98 (12%)
Frame = -1
Query: 327 LFVGPNPLSGFVEASVANASRVLHNFEVNQNVICNMI---TGEPICQYPLKVEHNHLSCS 157
L VG N L G + AS+AN S L + + QN+I I G + L +E N LS
Sbjct: 349 LDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGE 408
Query: 156 FEV--------REVGLKSN-VSKEVSIHIKNIS*ILKV 70
V + V L SN +S E+ + N++ + K+
Sbjct: 409 LPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKL 446
>gb|AAK55470.1|AC084295_3 putative phosphoinositide kinase [Oryza sativa]
Length = 1702
Score = 31.6 bits (70), Expect = 5.6
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 193 VLTNWLPSNHIADNILVDFKIM*YATRICHRCFNKTT 303
+LT+WLP DN+ DF + ++ R+C+ C + T
Sbjct: 14 LLTSWLPRRSNPDNVSRDFWMPDHSCRVCYDCDTQFT 50
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,533,091
Number of Sequences: 1393205
Number of extensions: 7284523
Number of successful extensions: 17750
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17749
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
