Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016456A_C01 KMC016456A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN71721.1| reverse transcriptase/ribonuclease H [Danio rerio] 32 4.3
ref|XP_139484.1| similar to pescadillo homolog 1, containing BRC... 31 9.6
>gb|AAN71721.1| reverse transcriptase/ribonuclease H [Danio rerio]
Length = 459
Score = 32.0 bits (71), Expect = 4.3
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 11/52 (21%)
Frame = -1
Query: 431 IQLQNCC*SSPQ-----SVLRCWLVT------HLKNLCDDFLQHQIPIEPPS 309
++L C SSP+ S CW++T HL +L DDFL +P EPP+
Sbjct: 111 VRLTFRCKSSPKIFDMLSEAICWILTNNYGVSHLIHLLDDFLIISLPSEPPA 162
>ref|XP_139484.1| similar to pescadillo homolog 1, containing BRCT domain (zebrafish)
[Mus musculus]
Length = 428
Score = 30.8 bits (68), Expect = 9.6
Identities = 13/48 (27%), Positives = 24/48 (49%)
Frame = -2
Query: 283 CYMLASFTWHAAPFMENKKLLYILNIIAVDRSILRCILLESSKLLSFL 140
C++ ++F W P + NK + Y ++ VD +L + LL F+
Sbjct: 141 CFLFSTFPWTGNPALSNKGIYYQAEVMDVDYRVLATFTEFYTMLLGFV 188
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,212,287
Number of Sequences: 1393205
Number of extensions: 7556404
Number of successful extensions: 14864
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14863
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
