Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016455A_C01 KMC016455A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA09028.1| cysteine-rich polycomb-like protein [Glycine max] 74 1e-12
ref|NP_193213.1| hypothetical protein; protein id: At4g14770.1 [... 44 0.001
gb|AAF27433.1|AF206324_1 putative DNA binding protein [Arabidops... 42 0.006
dbj|BAB01253.1| DNA binding protein-like [Arabidopsis thaliana] 42 0.006
gb|AAK76693.1| putative DNA binding protein [Arabidopsis thaliana] 42 0.006
>emb|CAA09028.1| cysteine-rich polycomb-like protein [Glycine max]
Length = 896
Score = 73.6 bits (179), Expect = 1e-12
Identities = 36/51 (70%), Positives = 43/51 (83%), Gaps = 4/51 (7%)
Frame = -2
Query: 518 PIQKRVSPPRV----IGSSSSGGLRTGRKFILKSVPSFPPLTPCMDSKGNG 378
P QKRVSPP+ IGSSSSGGLR+GRKFILK+VP+FP L+PC++SK NG
Sbjct: 825 PTQKRVSPPQSCHIGIGSSSSGGLRSGRKFILKAVPTFPSLSPCINSKSNG 875
>ref|NP_193213.1| hypothetical protein; protein id: At4g14770.1 [Arabidopsis
thaliana] gi|7485143|pir||F71410 hypothetical protein -
Arabidopsis thaliana gi|2244834|emb|CAB10256.1|
hypothetical protein [Arabidopsis thaliana]
gi|7268183|emb|CAB78519.1| hypothetical protein
[Arabidopsis thaliana]
Length = 658
Score = 43.5 bits (101), Expect = 0.001
Identities = 24/42 (57%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -2
Query: 518 PIQKRVSPPRVIGSSSS---GGLRTGRKFILKSVPSFPPLTP 402
P KRVSPP + SSS G GRK IL+S+PSFP LTP
Sbjct: 615 PNGKRVSPPHMESSSSGSILGRRNGGRKLILQSIPSFPSLTP 656
>gb|AAF27433.1|AF206324_1 putative DNA binding protein [Arabidopsis thaliana]
gi|7767425|gb|AAF69124.1|AF204059_1 CXC domain protein
TSO1 [Arabidopsis thaliana]
Length = 695
Score = 41.6 bits (96), Expect = 0.006
Identities = 23/43 (53%), Positives = 28/43 (64%), Gaps = 4/43 (9%)
Frame = -2
Query: 518 PIQKRVSPPRVIGSSSSGGLR----TGRKFILKSVPSFPPLTP 402
P KRVSPP+ GSS SG + GRK IL+S+P+FP L P
Sbjct: 652 PNSKRVSPPQP-GSSESGSILRRRGNGRKLILRSIPAFPSLNP 693
>dbj|BAB01253.1| DNA binding protein-like [Arabidopsis thaliana]
Length = 695
Score = 41.6 bits (96), Expect = 0.006
Identities = 23/43 (53%), Positives = 28/43 (64%), Gaps = 4/43 (9%)
Frame = -2
Query: 518 PIQKRVSPPRVIGSSSSGGLR----TGRKFILKSVPSFPPLTP 402
P KRVSPP+ GSS SG + GRK IL+S+P+FP L P
Sbjct: 652 PNSKRVSPPQP-GSSESGSILRRRGNGRKLILRSIPAFPSLNP 693
>gb|AAK76693.1| putative DNA binding protein [Arabidopsis thaliana]
Length = 526
Score = 41.6 bits (96), Expect = 0.006
Identities = 23/43 (53%), Positives = 28/43 (64%), Gaps = 4/43 (9%)
Frame = -2
Query: 518 PIQKRVSPPRVIGSSSSGGLR----TGRKFILKSVPSFPPLTP 402
P KRVSPP+ GSS SG + GRK IL+S+P+FP L P
Sbjct: 483 PNSKRVSPPQP-GSSESGSILRRRGNGRKLILRSIPAFPSLNP 524
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,562,841
Number of Sequences: 1393205
Number of extensions: 10322834
Number of successful extensions: 25433
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25419
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
