Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016450A_C01 KMC016450A_c01
(711 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177544.1| putative 2-isopropylmalate synthase; protein id... 122 6e-27
sp|O04974|LU1B_LYCPN 2-isopropylmalate synthase B (Alpha-isoprop... 117 1e-25
ref|NP_173285.1| 2-isopropylmalate synthase, putative; protein i... 114 1e-24
gb|AAF26002.1|AC013354_21 F15H18.3 [Arabidopsis thaliana] 114 1e-24
sp|O04973|LU1A_LYCPN 2-isopropylmalate synthase A (Alpha-isoprop... 95 1e-18
>ref|NP_177544.1| putative 2-isopropylmalate synthase; protein id: At1g74040.1,
supported by cDNA: gi_12330686, supported by cDNA:
gi_16323110 [Arabidopsis thaliana]
gi|25311586|pir||C96768 hypothetical protein F2P9.9
[imported] - Arabidopsis thaliana
gi|12325154|gb|AAG52530.1|AC016662_24 putative
2-isopropylmalate synthase; 30920-27612 [Arabidopsis
thaliana] gi|12330687|gb|AAG52882.1|AF327647_1
2-isopropylmalate synthase [Arabidopsis thaliana]
gi|16323111|gb|AAL15290.1| At1g74040/F2P9_9 [Arabidopsis
thaliana] gi|23463041|gb|AAN33190.1| At1g74040/F2P9_9
[Arabidopsis thaliana]
Length = 631
Score = 122 bits (305), Expect = 6e-27
Identities = 59/89 (66%), Positives = 77/89 (86%)
Frame = -1
Query: 711 TLLEYSMNAVTEAIDAIATTRVVIRGEPDHTSTHALTGETVHRTFGGSGAGMDVVVSSVK 532
TLLEYSMNAVTE IDAIATTRV+IRG+ +++ST+A+TGE+V RTF G+GAGMD+VVSSVK
Sbjct: 541 TLLEYSMNAVTEGIDAIATTRVLIRGDNNYSSTNAVTGESVERTFSGTGAGMDIVVSSVK 600
Query: 531 AYVAAINQMLGFKDTSPSTEKIPVSASKV 445
AYV A+N+MLGFK+ + + K P+ ++V
Sbjct: 601 AYVGALNKMLGFKEHTSTLSKTPLETNEV 629
>sp|O04974|LU1B_LYCPN 2-isopropylmalate synthase B (Alpha-isopropylmalate synthase B)
(Alpha-IPM synthetase B) gi|2213884|gb|AAB61599.1|
2-isopropylmalate synthase [Lycopersicon pennellii]
Length = 612
Score = 117 bits (294), Expect = 1e-25
Identities = 58/86 (67%), Positives = 69/86 (79%)
Frame = -1
Query: 711 TLLEYSMNAVTEAIDAIATTRVVIRGEPDHTSTHALTGETVHRTFGGSGAGMDVVVSSVK 532
TLLEYSMNAVT+ IDAIA+TRV+IRGE HTSTHALTGETVHRTF G+GA MD+V+SSV+
Sbjct: 525 TLLEYSMNAVTQGIDAIASTRVLIRGENGHTSTHALTGETVHRTFSGTGADMDIVISSVR 584
Query: 531 AYVAAINQMLGFKDTSPSTEKIPVSA 454
AYV A+N+M+ F+ K SA
Sbjct: 585 AYVGALNKMMSFRKLMAKNNKPESSA 610
>ref|NP_173285.1| 2-isopropylmalate synthase, putative; protein id: At1g18500.1
[Arabidopsis thaliana]
Length = 660
Score = 114 bits (286), Expect = 1e-24
Identities = 59/89 (66%), Positives = 73/89 (81%)
Frame = -1
Query: 711 TLLEYSMNAVTEAIDAIATTRVVIRGEPDHTSTHALTGETVHRTFGGSGAGMDVVVSSVK 532
TLLEYSMNAVTE IDAIATTRV+IRG ++ST+A+TGE V RTF G+GAGMD+VVSSVK
Sbjct: 572 TLLEYSMNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIVVSSVK 631
Query: 531 AYVAAINQMLGFKDTSPSTEKIPVSASKV 445
AYV A+N+M+ FK+ S + KIP ++V
Sbjct: 632 AYVGALNKMMDFKENSAT--KIPSQKNRV 658
>gb|AAF26002.1|AC013354_21 F15H18.3 [Arabidopsis thaliana]
Length = 675
Score = 114 bits (286), Expect = 1e-24
Identities = 59/89 (66%), Positives = 73/89 (81%)
Frame = -1
Query: 711 TLLEYSMNAVTEAIDAIATTRVVIRGEPDHTSTHALTGETVHRTFGGSGAGMDVVVSSVK 532
TLLEYSMNAVTE IDAIATTRV+IRG ++ST+A+TGE V RTF G+GAGMD+VVSSVK
Sbjct: 587 TLLEYSMNAVTEGIDAIATTRVLIRGSNKYSSTNAITGEEVQRTFSGTGAGMDIVVSSVK 646
Query: 531 AYVAAINQMLGFKDTSPSTEKIPVSASKV 445
AYV A+N+M+ FK+ S + KIP ++V
Sbjct: 647 AYVGALNKMMDFKENSAT--KIPSQKNRV 673
>sp|O04973|LU1A_LYCPN 2-isopropylmalate synthase A (Alpha-isopropylmalate synthase A)
(Alpha-IPM synthetase A) gi|2213882|gb|AAB61598.1|
2-isopropylmalate synthase [Lycopersicon pennellii]
Length = 589
Score = 94.7 bits (234), Expect = 1e-18
Identities = 46/73 (63%), Positives = 58/73 (79%)
Frame = -1
Query: 711 TLLEYSMNAVTEAIDAIATTRVVIRGEPDHTSTHALTGETVHRTFGGSGAGMDVVVSSVK 532
TLLEYSMNAVTE IDAIA+TRV I HT + TG+T+HRTF G+GA MDVV+SSV+
Sbjct: 502 TLLEYSMNAVTEGIDAIASTRVSICSIDRHTIMNGSTGQTIHRTFSGTGADMDVVISSVR 561
Query: 531 AYVAAINQMLGFK 493
AY+ A+N+ML ++
Sbjct: 562 AYIGALNKMLSYE 574
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 599,530,575
Number of Sequences: 1393205
Number of extensions: 13291301
Number of successful extensions: 31989
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 30869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31928
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
