Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016440A_C01 KMC016440A_c01
(807 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13843.1| unknown protein [Arabidopsis thaliana] 57 3e-07
ref|NP_194910.2| putative protein; protein id: At4g31820.1, supp... 57 3e-07
pir||T06304 hypothetical protein F11C18.20 - Arabidopsis thalian... 57 3e-07
ref|NP_606488.1| hypothetical protein [Streptococcus pyogenes MG... 35 1.7
ref|NP_268576.1| hypothetical protein [Streptococcus pyogenes] g... 35 1.7
>gb|AAM13843.1| unknown protein [Arabidopsis thaliana]
Length = 571
Score = 57.0 bits (136), Expect = 3e-07
Identities = 39/82 (47%), Positives = 52/82 (62%), Gaps = 5/82 (6%)
Frame = -3
Query: 727 KDVKLNKKT----TQNSRSGIPLLPSRSRRIFDKLWLGGNQGQGENRSPE-TSGSSNSPT 563
K V+L+KK+ + S G L+PSRSRRIF+K+W G +G+ N+S E +SGSS SP
Sbjct: 498 KKVELSKKSRGSKSTRSGGGAQLMPSRSRRIFEKIWPG--KGEISNKSSEVSSGSSQSPP 555
Query: 562 SLVPGDTQSSGSSLRPRSHSIS 497
+ +SS SS R R HSIS
Sbjct: 556 A------KSSSSSSRRRRHSIS 571
>ref|NP_194910.2| putative protein; protein id: At4g31820.1, supported by cDNA:
gi_20259444 [Arabidopsis thaliana]
gi|23297810|gb|AAN13030.1| unknown protein [Arabidopsis
thaliana]
Length = 571
Score = 57.0 bits (136), Expect = 3e-07
Identities = 39/82 (47%), Positives = 52/82 (62%), Gaps = 5/82 (6%)
Frame = -3
Query: 727 KDVKLNKKT----TQNSRSGIPLLPSRSRRIFDKLWLGGNQGQGENRSPE-TSGSSNSPT 563
K V+L+KK+ + S G L+PSRSRRIF+K+W G +G+ N+S E +SGSS SP
Sbjct: 498 KKVELSKKSRGSKSTRSGGGAQLMPSRSRRIFEKIWPG--KGEISNKSSEVSSGSSQSPP 555
Query: 562 SLVPGDTQSSGSSLRPRSHSIS 497
+ +SS SS R R HSIS
Sbjct: 556 A------KSSSSSSRRRRHSIS 571
>pir||T06304 hypothetical protein F11C18.20 - Arabidopsis thaliana
gi|4584521|emb|CAB40752.1| putative protein [Arabidopsis
thaliana] gi|7270085|emb|CAB79900.1| putative protein
[Arabidopsis thaliana]
Length = 498
Score = 57.0 bits (136), Expect = 3e-07
Identities = 39/82 (47%), Positives = 52/82 (62%), Gaps = 5/82 (6%)
Frame = -3
Query: 727 KDVKLNKKT----TQNSRSGIPLLPSRSRRIFDKLWLGGNQGQGENRSPE-TSGSSNSPT 563
K V+L+KK+ + S G L+PSRSRRIF+K+W G +G+ N+S E +SGSS SP
Sbjct: 425 KKVELSKKSRGSKSTRSGGGAQLMPSRSRRIFEKIWPG--KGEISNKSSEVSSGSSQSPP 482
Query: 562 SLVPGDTQSSGSSLRPRSHSIS 497
+ +SS SS R R HSIS
Sbjct: 483 A------KSSSSSSRRRRHSIS 498
>ref|NP_606488.1| hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|19747456|gb|AAL96987.1| hypothetical protein
[Streptococcus pyogenes MGAS8232]
Length = 287
Score = 34.7 bits (78), Expect = 1.7
Identities = 14/33 (42%), Positives = 25/33 (75%)
Frame = -2
Query: 101 YFLFVLGLVISVFLIDKSFSMVSISLHMFRKKI 3
YF +LGL++S+F++ SF+M+ + H FR+K+
Sbjct: 57 YFPLLLGLILSLFILSASFTMIDVVRH-FRQKV 88
>ref|NP_268576.1| hypothetical protein [Streptococcus pyogenes]
gi|13621493|gb|AAK33297.1| hypothetical protein
[Streptococcus pyogenes M1 GAS]
Length = 287
Score = 34.7 bits (78), Expect = 1.7
Identities = 14/33 (42%), Positives = 25/33 (75%)
Frame = -2
Query: 101 YFLFVLGLVISVFLIDKSFSMVSISLHMFRKKI 3
YF +LGL++S+F++ SF+M+ + H FR+K+
Sbjct: 57 YFPLLLGLILSLFILSASFTMIDVVRH-FRQKV 88
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 719,365,654
Number of Sequences: 1393205
Number of extensions: 16402929
Number of successful extensions: 37151
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 35264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37096
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 41176381974
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
