Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016431A_C01 KMC016431A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563768.1| expressed protein; protein id: At1g06520.1, sup... 114 5e-25
gb|AAM67097.1| unknown [Arabidopsis thaliana] 114 5e-25
ref|NP_563651.1| expressed protein; protein id: At1g02390.1, sup... 108 4e-23
ref|NP_191950.1| putative protein; protein id: At4g00400.1 [Arab... 100 1e-20
gb|AAL32544.1| Unknown protein [Arabidopsis thaliana] gi|2025989... 99 2e-20
>ref|NP_563768.1| expressed protein; protein id: At1g06520.1, supported by cDNA:
94974. [Arabidopsis thaliana] gi|25372666|pir||G86200
protein F12K11.15 [imported] - Arabidopsis thaliana
gi|6692682|gb|AAF24816.1|AC007592_9 F12K11.15
[Arabidopsis thaliana]
Length = 585
Score = 114 bits (286), Expect = 5e-25
Identities = 52/82 (63%), Positives = 65/82 (78%)
Frame = -1
Query: 504 YGTTASGHKCLDPVFHLMNPNPSYFVKILKRLPPSQTCNEGGRTRIEVANYVQHEIGNAL 325
YGTTASG KCLDP+F LMNP P Y ++ILK+LP TC GG++ EVAN++Q E+ L
Sbjct: 503 YGTTASGLKCLDPIFFLMNPRPVYCLEILKKLPKEMTC-AGGKSSFEVANFIQGELARVL 561
Query: 324 GFACTSLTRKDKYMVLAGNEGV 259
GF CT+LTR+DKY+VLAGNEG+
Sbjct: 562 GFECTNLTRRDKYLVLAGNEGI 583
>gb|AAM67097.1| unknown [Arabidopsis thaliana]
Length = 585
Score = 114 bits (286), Expect = 5e-25
Identities = 52/82 (63%), Positives = 65/82 (78%)
Frame = -1
Query: 504 YGTTASGHKCLDPVFHLMNPNPSYFVKILKRLPPSQTCNEGGRTRIEVANYVQHEIGNAL 325
YGTTASG KCLDP+F LMNP P Y ++ILK+LP TC GG++ EVAN++Q E+ L
Sbjct: 503 YGTTASGLKCLDPIFFLMNPRPVYCLEILKKLPKEMTC-AGGKSSFEVANFIQGELARVL 561
Query: 324 GFACTSLTRKDKYMVLAGNEGV 259
GF CT+LTR+DKY+VLAGNEG+
Sbjct: 562 GFECTNLTRRDKYLVLAGNEGI 583
>ref|NP_563651.1| expressed protein; protein id: At1g02390.1, supported by cDNA:
gi_16930412, supported by cDNA: gi_20453232 [Arabidopsis
thaliana] gi|25372668|pir||C86154 hypothetical protein
T6A9.8 - Arabidopsis thaliana
gi|9857535|gb|AAG00890.1|AC064879_8 Unknown protein
[Arabidopsis thaliana]
gi|16930413|gb|AAL31892.1|AF419560_1 At1g02390/T6A9_17
[Arabidopsis thaliana] gi|20453233|gb|AAM19855.1|
At1g02390/T6A9_17 [Arabidopsis thaliana]
Length = 530
Score = 108 bits (269), Expect = 4e-23
Identities = 54/90 (60%), Positives = 66/90 (73%), Gaps = 5/90 (5%)
Frame = -1
Query: 504 YGTTASGHKCLDPVFHLMNPNPSYFVKILKRLP--PSQTCN---EGGRTRIEVANYVQHE 340
YGTTASG K DP+F L+NP PSY VK+L + S TC + G+ EVAN+VQHE
Sbjct: 440 YGTTASGLKAFDPIFFLLNPFPSYTVKLLDPVSGSSSSTCRGVPDNGKVNFEVANHVQHE 499
Query: 339 IGNALGFACTSLTRKDKYMVLAGNEGVNQK 250
IGNALGF CT+LTR+DKY++LAGN GV +K
Sbjct: 500 IGNALGFECTNLTRRDKYLILAGNNGVVKK 529
>ref|NP_191950.1| putative protein; protein id: At4g00400.1 [Arabidopsis thaliana]
gi|7485267|pir||T01531 hypothetical protein A_IG005I10.4
- Arabidopsis thaliana gi|2252827|gb|AAB62826.1|
A_IG005I10.4 gene product [Arabidopsis thaliana]
gi|6049869|gb|AAF02784.1|AF195115_4 F5I10.4 gene product
[Arabidopsis thaliana] gi|7267127|emb|CAB80798.1|
putative protein [Arabidopsis thaliana]
Length = 289
Score = 100 bits (248), Expect = 1e-20
Identities = 49/80 (61%), Positives = 53/80 (66%)
Frame = -1
Query: 501 GTTASGHKCLDPVFHLMNPNPSYFVKILKRLPPSQTCNEGGRTRIEVANYVQHEIGNALG 322
GTT G K DP F MNP PSY L RLP T N GG+T IEVANYVQ IG LG
Sbjct: 200 GTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPIEVANYVQKVIGAVLG 259
Query: 321 FACTSLTRKDKYMVLAGNEG 262
F CT LTRKDKY++L GN+G
Sbjct: 260 FECTELTRKDKYLLLGGNDG 279
>gb|AAL32544.1| Unknown protein [Arabidopsis thaliana] gi|20259892|gb|AAM13293.1|
unknown protein [Arabidopsis thaliana]
Length = 503
Score = 99.4 bits (246), Expect = 2e-20
Identities = 48/80 (60%), Positives = 52/80 (65%)
Frame = -1
Query: 501 GTTASGHKCLDPVFHLMNPNPSYFVKILKRLPPSQTCNEGGRTRIEVANYVQHEIGNALG 322
GTT G K DP F MNP PSY L RLP T N GG+T EVANYVQ IG LG
Sbjct: 412 GTTVRGVKFWDPYFFFMNPRPSYEATFLDRLPEEMTVNGGGKTPFEVANYVQKVIGGVLG 471
Query: 321 FACTSLTRKDKYMVLAGNEG 262
F CT LTRKDKY++L GN+G
Sbjct: 472 FECTELTRKDKYLLLGGNDG 491
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,972,930
Number of Sequences: 1393205
Number of extensions: 9563751
Number of successful extensions: 20822
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 20323
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20794
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
