Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016421A_C01 KMC016421A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_651342.2| CG11848-PA [Drosophila melanogaster] gi|2838146... 25 7.1
gb|AAM11090.1| GH28553p [Drosophila melanogaster] 25 7.1
ref|NP_198673.2| F-box protein; protein id: At5g38570.1 [Arabido... 31 8.7
dbj|BAB10147.1| contains similarity to heat shock transcription ... 31 8.7
>ref|NP_651342.2| CG11848-PA [Drosophila melanogaster] gi|28381460|gb|AAF56407.3|
CG11848-PA [Drosophila melanogaster]
Length = 828
Score = 25.4 bits (54), Expect(2) = 7.1
Identities = 7/19 (36%), Positives = 12/19 (62%)
Frame = -2
Query: 345 FCWMVSFYSSSSMHAQLSR 289
FCW + FY ++ H Q+ +
Sbjct: 651 FCWALPFYGAAYFHGQIEQ 669
Score = 24.6 bits (52), Expect(2) = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 538 PIHQKNQNKKKVV*K*KRAPQLSSGKRL 455
PI QKN + K++ + KR PQ ++ ++L
Sbjct: 617 PISQKNSAEVKLLEQFKRVPQTATTRKL 644
>gb|AAM11090.1| GH28553p [Drosophila melanogaster]
Length = 828
Score = 25.4 bits (54), Expect(2) = 7.1
Identities = 7/19 (36%), Positives = 12/19 (62%)
Frame = -2
Query: 345 FCWMVSFYSSSSMHAQLSR 289
FCW + FY ++ H Q+ +
Sbjct: 651 FCWALPFYGAAYFHGQIEQ 669
Score = 24.6 bits (52), Expect(2) = 7.1
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 538 PIHQKNQNKKKVV*K*KRAPQLSSGKRL 455
PI QKN + K++ + KR PQ ++ ++L
Sbjct: 617 PISQKNSAEVKLLEQFKRVPQTATTRKL 644
>ref|NP_198673.2| F-box protein; protein id: At5g38570.1 [Arabidopsis thaliana]
Length = 379
Score = 31.2 bits (69), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = -1
Query: 352 ECVLLDGKFLQQQQHACPIVPDMTLSGIC 266
E +DGK+LQQ CP++ D++L C
Sbjct: 122 ESYFIDGKYLQQLISGCPVLEDLSLRFCC 150
>dbj|BAB10147.1| contains similarity to heat shock transcription factor
HSF30~gene_id:MBB18.12 [Arabidopsis thaliana]
Length = 411
Score = 31.2 bits (69), Expect = 8.7
Identities = 12/29 (41%), Positives = 18/29 (61%)
Frame = -1
Query: 352 ECVLLDGKFLQQQQHACPIVPDMTLSGIC 266
E +DGK+LQQ CP++ D++L C
Sbjct: 122 ESYFIDGKYLQQLISGCPVLEDLSLRFCC 150
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,955,435
Number of Sequences: 1393205
Number of extensions: 12066196
Number of successful extensions: 37563
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 35588
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37402
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
