Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016383A_C01 KMC016383A_c01
(378 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG22076.1|AF298157_1 protein phosphatase-2A B'epsilon subuni... 33 0.68
ref|NP_006237.1| protein phosphatase 2, regulatory subunit B (B5... 33 0.88
ref|XP_283076.1| protein phosphatase 2, regulatory subunit B (B5... 33 0.88
sp|Q28654|2A5E_RABIT SERINE/THREONINE PROTEIN PHOSPHATASE 2A, 56... 33 0.88
gb|AAG60620.2| LRRC4-like protein [Mus musculus] 31 3.4
>gb|AAG22076.1|AF298157_1 protein phosphatase-2A B'epsilon subunit [Xenopus laevis]
Length = 467
Score = 33.5 bits (75), Expect = 0.68
Identities = 25/77 (32%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Frame = -3
Query: 229 LLVQIPYVVETVIYLYPLLRFHIPFSFYVTFSTLGLVDPK---LKELVNFFLISQGCING 59
LL IP + ++L L + + F F T S L + + K L ELV++ IS+GC+
Sbjct: 50 LLKDIPTSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLT- 108
Query: 58 VSDLEVDYPEYNNI*KC 8
E YPE + C
Sbjct: 109 ----EQTYPEVVRMVSC 121
>ref|NP_006237.1| protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
[Homo sapiens] gi|7387498|sp|Q16537|2A5E_HUMAN
Serine/threonine protein phosphatase 2A, 56 kDa
regulatory subunit, epsilon isoform (PP2A, B subunit, B'
epsilon isoform) (PP2A, B subunit, B56 epsilon isoform)
(PP2A, B subunit, PR61 epsilon isoform) (PP2A, B
subunit, R5 epsilon isoform) gi|1418776|emb|CAA93153.1|
epsilon isoform of 61kDa regulatory subunit of PP2A
[Homo sapiens] gi|1478070|gb|AAB69752.1| protein
phosphatase B56-epsilon [Homo sapiens]
Length = 467
Score = 33.1 bits (74), Expect = 0.88
Identities = 24/77 (31%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Frame = -3
Query: 229 LLVQIPYVVETVIYLYPLLRFHIPFSFYVTFSTLGLVDPK---LKELVNFFLISQGCING 59
LL +P + ++L L + + F F T S L + + K L ELV++ IS+GC+
Sbjct: 50 LLKDVPSSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLT- 108
Query: 58 VSDLEVDYPEYNNI*KC 8
E YPE + C
Sbjct: 109 ----EQTYPEVVRMVSC 121
>ref|XP_283076.1| protein phosphatase 2, regulatory subunit B (B56), epsilon isoform
[Mus musculus] gi|26353352|dbj|BAC40306.1| unnamed
protein product [Mus musculus]
Length = 467
Score = 33.1 bits (74), Expect = 0.88
Identities = 24/77 (31%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Frame = -3
Query: 229 LLVQIPYVVETVIYLYPLLRFHIPFSFYVTFSTLGLVDPK---LKELVNFFLISQGCING 59
LL +P + ++L L + + F F T S L + + K L ELV++ IS+GC+
Sbjct: 50 LLKDVPTSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLT- 108
Query: 58 VSDLEVDYPEYNNI*KC 8
E YPE + C
Sbjct: 109 ----EQTYPEVVRMVSC 121
>sp|Q28654|2A5E_RABIT SERINE/THREONINE PROTEIN PHOSPHATASE 2A, 56 KDA REGULATORY SUBUNIT,
EPSILON ISOFORM (PP2A, B SUBUNIT, B' EPSILON ISOFORM)
(PP2A, B SUBUNIT, B56 EPSILON ISOFORM) (PP2A, B SUBUNIT,
PR61 EPSILON ISOFORM) (PP2A, B SUBUNIT, R5 EPSILON
ISOFORM) (PP2A, B SUBUNIT, B'-DELTA)
gi|1022892|gb|AAC48533.1| protein phosphatase PP2A0 B'
subunit delta isoform gi|1588339|prf||2208349F protein
phosphatase 2A:SUBUNIT=B':ISOTYPE=delta
Length = 165
Score = 33.1 bits (74), Expect = 0.88
Identities = 24/77 (31%), Positives = 37/77 (47%), Gaps = 3/77 (3%)
Frame = -3
Query: 229 LLVQIPYVVETVIYLYPLLRFHIPFSFYVTFSTLGLVDPK---LKELVNFFLISQGCING 59
LL +P + ++L L + + F F T S L + + K L ELV++ IS+GC+
Sbjct: 50 LLKDVPSSEQPELFLKKLQQCCVIFDFMDTLSDLKMKEYKRSTLNELVDYITISRGCLT- 108
Query: 58 VSDLEVDYPEYNNI*KC 8
E YPE + C
Sbjct: 109 ----EQTYPEVVRMVSC 121
>gb|AAG60620.2| LRRC4-like protein [Mus musculus]
Length = 652
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 9/50 (18%)
Frame = -2
Query: 275 PWPCDLMIRWA--WFPHFVGSNSLCCRNGNIFVP-------LVEVPHSIF 153
PW CD I W W ++ +NS CC G P LVEV + F
Sbjct: 300 PWNCDCDILWLAWWLREYIPTNSTCC--GRCHAPMHMRGRYLVEVDQAAF 347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 313,029,265
Number of Sequences: 1393205
Number of extensions: 6508548
Number of successful extensions: 14062
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14059
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
