Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016336A_C01 KMC016336A_c01
(698 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181909.1| putative small nuclear ribonucleoprotein polype... 161 7e-39
ref|NP_191540.1| U6 snRNA-associated Sm-like protein; protein id... 159 3e-38
gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis ... 159 4e-38
ref|NP_009011.1| Sm protein F [Homo sapiens] gi|20885386|ref|XP_... 139 3e-32
ref|XP_134104.1| similar to U6 snRNA-associated Sm-like protein ... 130 1e-29
>ref|NP_181909.1| putative small nuclear ribonucleoprotein polypeptide F; protein id:
At2g43810.1 [Arabidopsis thaliana]
gi|25408906|pir||G84870 hypothetical protein At2g43810
[imported] - Arabidopsis thaliana
gi|2281089|gb|AAB64025.1| putative small nuclear
ribonucleoprotein polypeptide F [Arabidopsis thaliana]
Length = 91
Score = 161 bits (408), Expect = 7e-39
Identities = 80/91 (87%), Positives = 85/91 (92%), Gaps = 1/91 (1%)
Frame = -3
Query: 636 MSGA-EKGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 460
MSG EK SGTTKTPADFLKSIRG+PVVVKLNSGVDYRGIL CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVGEKASGTTKTPADFLKSIRGKPVVVKLNSGVDYRGILTCLDGYMNIAMEQTEEYVN 60
Query: 459 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 367
GQLKN YGDAF+RGNNVLYIST+K TL++GA
Sbjct: 61 GQLKNTYGDAFVRGNNVLYISTTKGTLSDGA 91
>ref|NP_191540.1| U6 snRNA-associated Sm-like protein; protein id: At3g59810.1,
supported by cDNA: 25079. [Arabidopsis thaliana]
gi|11358907|pir||T47805 U6 snRNA-associated Sm-like
protein - Arabidopsis thaliana
gi|7019675|emb|CAB75800.1| U6 snRNA-associated Sm-like
protein [Arabidopsis thaliana]
gi|27754440|gb|AAO22668.1| putative U6 snRNA-associated
Sm protein [Arabidopsis thaliana]
gi|28394039|gb|AAO42427.1| putative U6 snRNA-associated
Sm protein [Arabidopsis thaliana]
Length = 91
Score = 159 bits (403), Expect = 3e-38
Identities = 81/91 (89%), Positives = 83/91 (91%), Gaps = 1/91 (1%)
Frame = -3
Query: 636 MSGAE-KGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 460
MSG E K SGTTKTPADFLKSIRGRPVVVKLNSGVDYRG L CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVEEKVSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVN 60
Query: 459 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 367
GQLKNKYGDAFIRGNNVLYIST T+A+GA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTVNMTVADGA 91
>gb|AAM63434.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 91
Score = 159 bits (402), Expect = 4e-38
Identities = 80/91 (87%), Positives = 83/91 (90%), Gaps = 1/91 (1%)
Frame = -3
Query: 636 MSGA-EKGSGTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 460
MSG EK SGTTKTPADFLKSIRGRPV+VKLNSGVDYRG L CLDGYMNIAMEQTEEYVN
Sbjct: 1 MSGVGEKVSGTTKTPADFLKSIRGRPVIVKLNSGVDYRGTLTCLDGYMNIAMEQTEEYVN 60
Query: 459 GQLKNKYGDAFIRGNNVLYISTSKRTLAEGA 367
GQLKNKYGDAFIRGNNVLYIST T+A+GA
Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTVNMTVADGA 91
>ref|NP_009011.1| Sm protein F [Homo sapiens] gi|20885386|ref|XP_134505.1| RIKEN cDNA
2410088K19 [Mus musculus]
gi|10720080|sp|Q9Y4Y8|LSM6_HUMAN U6 snRNA-associated
Sm-like protein LSm6 (Sm protein F)
gi|5262862|emb|CAB45869.1| Lsm6 protein [Homo sapiens]
gi|5919153|gb|AAD56230.1|AF182292_1 U6 snRNA-associated
Sm-like protein LSm6 [Homo sapiens]
gi|12859166|dbj|BAB31555.1| unnamed protein product [Mus
musculus] gi|16359118|gb|AAH16026.1|AAH16026 Sm protein
F [Homo sapiens] gi|20987896|gb|AAH30427.1| RIKEN cDNA
2410088K19 gene [Mus musculus]
gi|26347205|dbj|BAC37251.1| unnamed protein product [Mus
musculus]
Length = 80
Score = 139 bits (351), Expect = 3e-32
Identities = 66/75 (88%), Positives = 71/75 (94%)
Frame = -3
Query: 603 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 424
+TP+DFLK I GRPVVVKLNSGVDYRG+LACLDGYMNIA+EQTEEYVNGQLKNKYGDAFI
Sbjct: 6 QTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKYGDAFI 65
Query: 423 RGNNVLYISTSKRTL 379
RGNNVLYIST KR +
Sbjct: 66 RGNNVLYISTQKRRM 80
>ref|XP_134104.1| similar to U6 snRNA-associated Sm-like protein LSm6 (Sm protein F)
[Mus musculus]
Length = 104
Score = 130 bits (328), Expect = 1e-29
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -3
Query: 603 KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKNKYGDAFI 424
+TP DFLK I GRPVVVKLNSGV YRG+L CLDGYMNIA+EQTEEYVNGQLKNKY DAFI
Sbjct: 6 QTPNDFLKQIIGRPVVVKLNSGVGYRGVLVCLDGYMNIALEQTEEYVNGQLKNKYRDAFI 65
Query: 423 RGNNVLYISTSKR 385
RGNNVLYIST KR
Sbjct: 66 RGNNVLYISTQKR 78
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,767,769
Number of Sequences: 1393205
Number of extensions: 12642816
Number of successful extensions: 28993
Number of sequences better than 10.0: 130
Number of HSP's better than 10.0 without gapping: 27989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28977
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
