Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016324A_C01 KMC016324A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187143.1| putative ribosomal protein s19 or s24; protein ... 114 3e-49
prf||1909359A ribosomal protein S19 110 4e-48
gb|AAM63791.1| 40S ribosomal protein S19-like [Arabidopsis thali... 109 3e-47
ref|NP_198158.1| 40S ribosomal protein S19 - like; protein id: A... 109 7e-47
dbj|BAB84441.1| putative 40S ribosomal protein S24 [Oryza sativa... 104 2e-46
>ref|NP_187143.1| putative ribosomal protein s19 or s24; protein id: At3g04920.1,
supported by cDNA: 25350., supported by cDNA:
gi_15215671, supported by cDNA: gi_17065189, supported
by cDNA: gi_20259967, supported by cDNA: gi_20334887
[Arabidopsis thaliana] gi|11134742|sp|Q9SS17|RS24_ARATH
40S ribosomal protein S24
gi|12322851|gb|AAG51413.1|AC009465_13 putative ribosomal
protein s19 or s24; 43956-42880 [Arabidopsis thaliana]
gi|15215672|gb|AAK91381.1| AT3g04920/T9J14_13
[Arabidopsis thaliana] gi|17065190|gb|AAL32749.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|20259968|gb|AAM13331.1| putative ribosomal protein
s19 or s24 [Arabidopsis thaliana]
gi|20334888|gb|AAM16200.1| AT3g04920/T9J14_13
[Arabidopsis thaliana] gi|21554374|gb|AAM63481.1|
putative ribosomal protein s19 or s24 [Arabidopsis
thaliana]
Length = 133
Score = 114 bits (285), Expect(2) = 3e-49
Identities = 53/61 (86%), Positives = 59/61 (95%)
Frame = -1
Query: 547 IRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFQFRTPFG 368
IRTRKFMTNRLLSRKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +FVF+FRT FG
Sbjct: 8 IRTRKFMTNRLLSRKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFVFKFRTHFG 67
Query: 367 G 365
G
Sbjct: 68 G 68
Score = 102 bits (255), Expect(2) = 3e-49
Identities = 49/65 (75%), Positives = 58/65 (88%)
Frame = -2
Query: 366 GGQSPGFGLIYDSLEML*KYEPQYRLIRDGLDTKVEKSREPLKERKNRAKKIRGVKKTKA 187
GG+S GFGLIYD++E K+EP+YRLIR+GLDTK+EKSR+ +KERKNRAKKIRGVKKTKA
Sbjct: 68 GGKSSGFGLIYDTVESAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKA 127
Query: 186 SDAAK 172
DA K
Sbjct: 128 GDAKK 132
>prf||1909359A ribosomal protein S19
Length = 133
Score = 110 bits (275), Expect(2) = 4e-48
Identities = 52/61 (85%), Positives = 58/61 (94%)
Frame = -1
Query: 547 IRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFQFRTPFG 368
IRTRKFMTNRLL+RKQFI+DVLHPGRANVSKAELKEKLAR+Y+VKD N +FVF+FRT FG
Sbjct: 8 IRTRKFMTNRLLARKQFIIDVLHPGRANVSKAELKEKLARMYEVKDTNAIFVFKFRTHFG 67
Query: 367 G 365
G
Sbjct: 68 G 68
Score = 102 bits (255), Expect(2) = 4e-48
Identities = 50/65 (76%), Positives = 57/65 (86%)
Frame = -2
Query: 366 GGQSPGFGLIYDSLEML*KYEPQYRLIRDGLDTKVEKSREPLKERKNRAKKIRGVKKTKA 187
GG+S GFGLIYDS+E KYEP+YRLIR+GLDTKVEKSR+ +KERKNRAKK+RGVKK KA
Sbjct: 68 GGKSTGFGLIYDSVENAKKYEPKYRLIRNGLDTKVEKSRKQMKERKNRAKKVRGVKKIKA 127
Query: 186 SDAAK 172
DA K
Sbjct: 128 GDAKK 132
>gb|AAM63791.1| 40S ribosomal protein S19-like [Arabidopsis thaliana]
Length = 133
Score = 109 bits (272), Expect(2) = 3e-47
Identities = 50/61 (81%), Positives = 57/61 (92%)
Frame = -1
Query: 547 IRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFQFRTPFG 368
IRTR FMTNRLL+RKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +F F+FRT FG
Sbjct: 8 IRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFG 67
Query: 367 G 365
G
Sbjct: 68 G 68
Score = 101 bits (251), Expect(2) = 3e-47
Identities = 48/65 (73%), Positives = 58/65 (88%)
Frame = -2
Query: 366 GGQSPGFGLIYDSLEML*KYEPQYRLIRDGLDTKVEKSREPLKERKNRAKKIRGVKKTKA 187
GG+S G+GLIYD++E K+EP+YRLIR+GLDTK+EKSR+ +KERKNRAKKIRGVKKTKA
Sbjct: 68 GGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKA 127
Query: 186 SDAAK 172
DA K
Sbjct: 128 GDAKK 132
>ref|NP_198158.1| 40S ribosomal protein S19 - like; protein id: At5g28060.1,
supported by cDNA: 27178., supported by cDNA:
gi_14423509, supported by cDNA: gi_18377453 [Arabidopsis
thaliana] gi|14423510|gb|AAK62437.1|AF386992_1 Unknown
protein [Arabidopsis thaliana]
gi|18377454|gb|AAL66893.1| unknown protein [Arabidopsis
thaliana]
Length = 133
Score = 109 bits (272), Expect(2) = 7e-47
Identities = 50/61 (81%), Positives = 57/61 (92%)
Frame = -1
Query: 547 IRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFQFRTPFG 368
IRTR FMTNRLL+RKQF++DVLHPGRANVSKAELKEKLAR+Y+VKDPN +F F+FRT FG
Sbjct: 8 IRTRNFMTNRLLARKQFVIDVLHPGRANVSKAELKEKLARMYEVKDPNAIFCFKFRTHFG 67
Query: 367 G 365
G
Sbjct: 68 G 68
Score = 99.8 bits (247), Expect(2) = 7e-47
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = -2
Query: 366 GGQSPGFGLIYDSLEML*KYEPQYRLIRDGLDTKVEKSREPLKERKNRAKKIRGVKKTKA 187
GG+S G+GLIYD++E K+EP+YRLIR+GLDTK+EKSR+ +KERKNRAKKIRGVKKTKA
Sbjct: 68 GGKSSGYGLIYDTVENAKKFEPKYRLIRNGLDTKIEKSRKQIKERKNRAKKIRGVKKTKA 127
Query: 186 SDAAK 172
D K
Sbjct: 128 GDTKK 132
>dbj|BAB84441.1| putative 40S ribosomal protein S24 [Oryza sativa (japonica
cultivar-group)] gi|20160546|dbj|BAB89495.1| putative
40S ribosomal protein S24 [Oryza sativa (japonica
cultivar-group)]
Length = 138
Score = 104 bits (260), Expect(2) = 2e-46
Identities = 48/61 (78%), Positives = 57/61 (92%)
Frame = -1
Query: 547 IRTRKFMTNRLLSRKQFIVDVLHPGRANVSKAELKEKLARLYDVKDPNTVFVFQFRTPFG 368
+RTRKFMTNRLLSRKQF+++V+HPGR NVSKAELKEKLA+LY+VKD N +FVF+FRT FG
Sbjct: 12 LRTRKFMTNRLLSRKQFVLEVIHPGRPNVSKAELKEKLAKLYEVKDANCIFVFKFRTHFG 71
Query: 367 G 365
G
Sbjct: 72 G 72
Score = 102 bits (255), Expect(2) = 2e-46
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = -2
Query: 366 GGQSPGFGLIYDSLEML*KYEPQYRLIRDGLDTKVEKSREPLKERKNRAKKIRGVKKTKA 187
GG+S GFGLIYD+L+ KYEP+YRLIR+GL TKVEKSR+ +KERKNRAKKIRGVKKTKA
Sbjct: 72 GGKSTGFGLIYDNLDAAKKYEPKYRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKA 131
Query: 186 SDAAKGGKKK 157
DA GKKK
Sbjct: 132 GDA---GKKK 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 466,185,218
Number of Sequences: 1393205
Number of extensions: 9784174
Number of successful extensions: 27485
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 26486
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27411
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
