Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016319A_C01 KMC016319A_c01
(638 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173069.1| unknown protein; protein id: At1g16180.1 [Arabi... 322 3e-87
gb|AAO73245.1| putative membrane protein [Oryza sativa (japonica... 239 2e-62
ref|NP_187268.1| hypothetical protein; protein id: At3g06170.1 [... 115 4e-25
gb|AAL36053.1| AT3g24470/MXP5_4 [Arabidopsis thaliana] 87 1e-16
pir||T46332 hypothetical protein DKFZp434H0413.1 - human (fragme... 85 7e-16
>ref|NP_173069.1| unknown protein; protein id: At1g16180.1 [Arabidopsis thaliana]
gi|25354033|pir||F86296 hypothetical protein T24D18.26 -
Arabidopsis thaliana
gi|6587821|gb|AAF18512.1|AC010924_25 Contains similarity
to gb|AF181686 membrane protein TMS1d from Drosophila
melanogaster. ESTs gb|R64994, gb|AI994832, gb|Z47674
come from this gene. [Arabidopsis thaliana]
Length = 412
Score = 322 bits (825), Expect = 3e-87
Identities = 149/171 (87%), Positives = 162/171 (94%)
Frame = +3
Query: 126 MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLLVAGILREVAAPLMESI 305
M+AASCLASCCAACACDACRTVVSGISRRSARIAYCGLFA SL+V+ ILREVAAPLME +
Sbjct: 1 MFAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFALSLIVSWILREVAAPLMEKL 60
Query: 306 PWINHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKNQKDPRDGLHHGGWMMKI 485
PWINHF TP REWFETDAVLRVSLGNFLFF+IL+V+M+GVKNQKDPRDG+HHGGWMMKI
Sbjct: 61 PWINHFHKTPDREWFETDAVLRVSLGNFLFFSILSVMMIGVKNQKDPRDGIHHGGWMMKI 120
Query: 486 ICWFLLVIFMFFLPNEIISFYETISKFGSGMFLLVQVVLLLDFVHGWNDKW 638
ICW +LVIFMFFLPNEIISFYE++SKFG+G FLLVQVVLLLDFVHGWND W
Sbjct: 121 ICWCILVIFMFFLPNEIISFYESMSKFGAGFFLLVQVVLLLDFVHGWNDTW 171
>gb|AAO73245.1| putative membrane protein [Oryza sativa (japonica cultivar-group)]
Length = 417
Score = 239 bits (611), Expect = 2e-62
Identities = 104/171 (60%), Positives = 135/171 (78%)
Frame = +3
Query: 126 MWAASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLLVAGILREVAAPLMESI 305
MW ASCLAS CA C C+ C + +S ISRRSAR+AYCGLFA SL+++ ++R+ A PL++ I
Sbjct: 1 MWCASCLASACAGCTCNLCASALSAISRRSARLAYCGLFAASLILSFLMRQFATPLLKQI 60
Query: 306 PWINHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKNQKDPRDGLHHGGWMMKI 485
PWIN F +T EWF+ +AVLRVSLGNFLFF I A++M+GVK+Q D RD HHGGW+ KI
Sbjct: 61 PWINTFDYTQPDEWFQMNAVLRVSLGNFLFFAIFALMMIGVKDQNDRRDAWHHGGWIAKI 120
Query: 486 ICWFLLVIFMFFLPNEIISFYETISKFGSGMFLLVQVVLLLDFVHGWNDKW 638
+ W +L++ MF +PN +I+ YE +SKFGSG+FLLVQVV+LLDF + WND W
Sbjct: 121 VVWVVLIVLMFCVPNVVITIYEVLSKFGSGLFLLVQVVMLLDFTNNWNDSW 171
>ref|NP_187268.1| hypothetical protein; protein id: At3g06170.1 [Arabidopsis
thaliana] gi|6862921|gb|AAF30310.1|AC018907_10
hypothetical protein [Arabidopsis thaliana]
Length = 315
Score = 115 bits (289), Expect = 4e-25
Identities = 50/74 (67%), Positives = 59/74 (79%)
Frame = +3
Query: 417 MVGVKNQKDPRDGLHHGGWMMKIICWFLLVIFMFFLPNEIISFYETISKFGSGMFLLVQV 596
M+GVK+Q D RD HHGGW +K+I WFLLV+ MFF+PN I+S Y T+SKFG+G FLLVQV
Sbjct: 1 MIGVKDQNDRRDSWHHGGWGLKMIVWFLLVVLMFFVPNVIVSLYGTLSKFGAGAFLLVQV 60
Query: 597 VLLLDFVHGWNDKW 638
VLLLD H WND W
Sbjct: 61 VLLLDATHNWNDSW 74
>gb|AAL36053.1| AT3g24470/MXP5_4 [Arabidopsis thaliana]
Length = 409
Score = 87.4 bits (215), Expect = 1e-16
Identities = 50/147 (34%), Positives = 77/147 (52%), Gaps = 1/147 (0%)
Frame = +3
Query: 195 SGISRRSARIAYCGLFAFSLLVAGILREVAAPLMESIPWINHFKHTPSRE-WFETDAVLR 371
+G + AR Y +F + L+A R+ + + FK+ E TD VLR
Sbjct: 33 NGCNPWMARYVYGLIFLIANLLAWAARDYGRGALRKV---TRFKNCKGGENCLGTDGVLR 89
Query: 372 VSLGNFLFFTILAVLMVGVKNQKDPRDGLHHGGWMMKIICWFLLVIFMFFLPNEIISFYE 551
VSLG FLF+ ++ + +G RD H G W +K+I W L I F LP+ II Y
Sbjct: 90 VSLGCFLFYFVMFLSTLGTSKTHSSRDRWHSGWWFVKLIMWPALTIIPFLLPSSIIHLYG 149
Query: 552 TISKFGSGMFLLVQVVLLLDFVHGWND 632
I+ FG+G+FLL+Q++ ++ F+ N+
Sbjct: 150 EIAHFGAGVFLLIQLISVISFIQWLNE 176
>pir||T46332 hypothetical protein DKFZp434H0413.1 - human (fragment)
gi|6807690|emb|CAB70662.1| hypothetical protein [Homo
sapiens]
Length = 457
Score = 85.1 bits (209), Expect = 7e-16
Identities = 55/177 (31%), Positives = 83/177 (46%), Gaps = 9/177 (5%)
Frame = +3
Query: 135 ASCLASCCAACACDACRTVVSGISRRSARIAYCGLFAFSLLVAGILREVAAPLMES---- 302
AS + C + C CR SG + R+ Y + VA ++ P ME
Sbjct: 15 ASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYALFLLVGVCVACVM---LIPGMEEQLNK 71
Query: 303 IPWI--NHFKHTPSREWFETDAVLRVSLGNFLFFTILAVLMVGVKNQKDPRDGLHHGGWM 476
IP N P AV R+ G +F+ +L++LM+ VK+ DPR +H+G W
Sbjct: 72 IPGFCENEKGVVPCNILVGYKAVYRLCFGLAMFYLLLSLLMIKVKSSSDPRAAVHNGFWF 131
Query: 477 MKIICWFLLVIFMFFLPN---EIISFYETISKFGSGMFLLVQVVLLLDFVHGWNDKW 638
K ++I FF+P + FY + G+ F+L+Q+VLL+DF H WN+ W
Sbjct: 132 FKFAAAIAIIIGAFFIPEGTFTTVWFY--VGMAGAFCFILIQLVLLIDFAHSWNESW 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 606,308,739
Number of Sequences: 1393205
Number of extensions: 14672490
Number of successful extensions: 102990
Number of sequences better than 10.0: 483
Number of HSP's better than 10.0 without gapping: 77070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98740
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26723359358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
