Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016301A_C01 KMC016301A_c01
(896 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protei... 164 2e-39
sp|Q9LGE6|LSM4_ORYSA Probable U6 snRNA-associated Sm-like protei... 158 9e-38
dbj|BAA85219.1| unnamed protein product [Oryza sativa (japonica ... 147 3e-34
sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protei... 145 8e-34
gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana] 139 8e-32
>sp|Q43582|LSM4_TOBAC Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich
protein 10) (GRP 10) gi|1076626|pir||S54169 glycine rich
protein - common tobacco gi|790473|emb|CAA58702.1|
soluble, glycine rich protein [Nicotiana tabacum]
Length = 146
Score = 164 bits (414), Expect = 2e-39
Identities = 80/104 (76%), Positives = 85/104 (80%)
Frame = -3
Query: 894 TNKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGGREE 715
T+KDGDRFWRMPECY+RGNTIKYLRVPDEVIDKVQEE KSRTDRKPPGVGR R RGGR++
Sbjct: 46 TSKDGDRFWRMPECYVRGNTIKYLRVPDEVIDKVQEEAKSRTDRKPPGVGRARARGGRDD 105
Query: 714 GAGGRPAKGPGRGFDDGAKGPGGRGRGGLGGKPGGSRGAGRGRG 583
A GR KG GRG DDG G GRG+GG K GG RG GRGRG
Sbjct: 106 SAVGRQPKGIGRGMDDG--GAKGRGKGGPSAKSGG-RGGGRGRG 146
>sp|Q9LGE6|LSM4_ORYSA Probable U6 snRNA-associated Sm-like protein LSm4
gi|9711887|dbj|BAB07978.1| putative glycine rich protein
[Oryza sativa (japonica cultivar-group)]
Length = 147
Score = 158 bits (400), Expect = 9e-38
Identities = 82/106 (77%), Positives = 89/106 (83%), Gaps = 2/106 (1%)
Frame = -3
Query: 894 TNKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRTDRKPPGVGRGRGRGGRE 718
T+KDGD+FWRMPECYIRGNTIKYLRVPDEVIDKVQEET KSR+DR+PPGVGRGRGRG
Sbjct: 46 TSKDGDKFWRMPECYIRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIG 105
Query: 717 EGAGGRPAKGPGRGFDD-GAKGPGGRGRGGLGGKPGGSRGAGRGRG 583
GGR G GRG DD G+KG GGRGRGG+GGK GG +G GRGRG
Sbjct: 106 TKPGGR---GIGRGQDDGGSKGGGGRGRGGIGGK-GGIKGGGRGRG 147
>dbj|BAA85219.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 1197
Score = 147 bits (370), Expect = 3e-34
Identities = 75/96 (78%), Positives = 81/96 (84%), Gaps = 2/96 (2%)
Frame = -3
Query: 894 TNKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEET-KSRTDRKPPGVGRGRGRGGRE 718
T+KDGD+FWRMPECYIRGNTIKYLRVPDEVIDKVQEET KSR+DR+PPGVGRGRGRG
Sbjct: 46 TSKDGDKFWRMPECYIRGNTIKYLRVPDEVIDKVQEETSKSRSDRRPPGVGRGRGRGDIG 105
Query: 717 EGAGGRPAKGPGRGFDD-GAKGPGGRGRGGLGGKPG 613
GGR G GRG DD G+KG GGRGRGG+GGK G
Sbjct: 106 TKPGGR---GIGRGQDDGGSKGGGGRGRGGIGGKGG 138
>sp|Q9ZRU9|LSM4_FAGSY Probable U6 snRNA-associated Sm-like protein LSm4 (Glycine-rich
protein 2) gi|3927916|emb|CAA10233.1| glycine-rich
protein 2 [Fagus sylvatica]
Length = 148
Score = 145 bits (366), Expect = 8e-34
Identities = 74/104 (71%), Positives = 78/104 (74%), Gaps = 2/104 (1%)
Frame = -3
Query: 894 TNKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGGREE 715
T+KDGDRFWRMP+CYIRGNTIKYLRVPDEVIDKVQEETKSR DRKPPGVGRGRGR GREE
Sbjct: 46 TSKDGDRFWRMPDCYIRGNTIKYLRVPDEVIDKVQEETKSRADRKPPGVGRGRGR-GREE 104
Query: 714 GAGGRPAKGPGRG--FDDGAKGPGGRGRGGLGGKPGGSRGAGRG 589
G+G R +G GR RGRG GK GG G GRG
Sbjct: 105 GSGARQVRGAGRDVMMQVAKAWVEVRGRGASAGKSGGRGGRGRG 148
>gb|AAM65462.1| glycine rich protein-like [Arabidopsis thaliana]
Length = 129
Score = 139 bits (349), Expect = 8e-32
Identities = 74/104 (71%), Positives = 77/104 (73%)
Frame = -3
Query: 894 TNKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEETKSRTDRKPPGVGRGRGRGGREE 715
T+KDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE K+RTDRKPPGVGRGRGRG
Sbjct: 46 TSKDGDRFWRMPECYIRGNTIKYLRVPDEVIDKVQEE-KTRTDRKPPGVGRGRGRG---- 100
Query: 714 GAGGRPAKGPGRGFDDGAKGPGGRGRGGLGGKPGGSRGAGRGRG 583
DDG G GRGRG GK GG+RGAGRGRG
Sbjct: 101 -------------LDDG--GARGRGRGTSMGKMGGNRGAGRGRG 129
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 819,472,011
Number of Sequences: 1393205
Number of extensions: 22261736
Number of successful extensions: 359189
Number of sequences better than 10.0: 7966
Number of HSP's better than 10.0 without gapping: 102854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235196
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 49054409712
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
