Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016291A_C01 KMC016291A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN72022.1| putative protein [Arabidopsis thaliana] 39 0.038
ref|NP_195199.1| putative protein; protein id: At4g34730.1 [Arab... 39 0.038
ref|NP_473008.2| hypothetical protein [Plasmodium falciparum 3D7... 34 1.2
pir||A71616 secreted protein PfS230 homolog PFB0400w - malaria p... 34 1.2
gb|AAC60282.1| chromo-helicase-DNA-binding on the Z chromosome p... 33 2.1
>gb|AAN72022.1| putative protein [Arabidopsis thaliana]
Length = 215
Score = 39.3 bits (90), Expect = 0.038
Identities = 25/44 (56%), Positives = 30/44 (67%), Gaps = 1/44 (2%)
Frame = -3
Query: 590 LDKIKNEKFS-EGQTKEQLDSSAQEDDDDSWGGEDPDEGIIYVE 462
LDKIK EK S EG+T+ S + EDD D W +DPDE IIYV+
Sbjct: 176 LDKIKAEKGSGEGKTEP---SDSTEDDQD-WEVDDPDEDIIYVK 215
>ref|NP_195199.1| putative protein; protein id: At4g34730.1 [Arabidopsis thaliana]
gi|3914555|sp|O65693|RBFA_ARATH Putative
ribosome-binding factor A, chloroplast precursor
gi|7487664|pir||T05293 hypothetical protein T4L20.310 -
Arabidopsis thaliana gi|3096942|emb|CAA18852.1| putative
protein [Arabidopsis thaliana]
gi|7270424|emb|CAB80190.1| putative protein [Arabidopsis
thaliana]
Length = 200
Score = 39.3 bits (90), Expect = 0.038
Identities = 25/44 (56%), Positives = 30/44 (67%), Gaps = 1/44 (2%)
Frame = -3
Query: 590 LDKIKNEKFS-EGQTKEQLDSSAQEDDDDSWGGEDPDEGIIYVE 462
LDKIK EK S EG+T+ S + EDD D W +DPDE IIYV+
Sbjct: 161 LDKIKAEKGSGEGKTEP---SDSTEDDQD-WEVDDPDEDIIYVK 200
>ref|NP_473008.2| hypothetical protein [Plasmodium falciparum 3D7]
gi|23503382|gb|AAC71869.2| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2508
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 HCKAKLQAQIISSLTSKN-SIIPDKCFNEVFSKTERSLHI 425
+C+ KL+ II SL N +I P+ CFN VF KT + I
Sbjct: 1463 YCEVKLKENIIISLNCPNGNINPNNCFNNVFLKTNMNEQI 1502
>pir||A71616 secreted protein PfS230 homolog PFB0400w - malaria parasite
(Plasmodium falciparum)
Length = 2496
Score = 34.3 bits (77), Expect = 1.2
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 309 HCKAKLQAQIISSLTSKN-SIIPDKCFNEVFSKTERSLHI 425
+C+ KL+ II SL N +I P+ CFN VF KT + I
Sbjct: 1451 YCEVKLKENIIISLNCPNGNINPNNCFNNVFLKTNMNEQI 1490
>gb|AAC60282.1| chromo-helicase-DNA-binding on the Z chromosome protein [Gallus
gallus]
Length = 1808
Score = 33.5 bits (75), Expect = 2.1
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = -3
Query: 584 KIKNEKFSEGQTKEQLDSSAQEDDDD 507
K K+ K S GQ K QLDSS +E+DDD
Sbjct: 196 KPKSGKKSTGQKKRQLDSSEEEEDDD 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,316,169
Number of Sequences: 1393205
Number of extensions: 10687820
Number of successful extensions: 33140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 30235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32690
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
