Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016286A_C01 KMC016286A_c01
(494 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA16749.1| hypothetical protein [Plasmodium yoelii yoelii] 37 0.092
ref|NP_701653.1| hypothetical protein [Plasmodium falciparum 3D7... 36 0.20
gb|EAA21180.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.27
ref|NP_032717.1| neurofilament 3, medium; neurofilament, medium ... 35 0.35
dbj|BAC34724.1| unnamed protein product [Mus musculus] 35 0.35
>gb|EAA16749.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2140
Score = 37.4 bits (85), Expect = 0.092
Identities = 21/70 (30%), Positives = 35/70 (50%)
Frame = -2
Query: 472 KKTLLGPPAKKKPEEITEGNEEMATLKQEKDNENPEETSEGNEETATLKHEKGNEINEGA 293
KKT A+KK E+ E N + + K+N+N +E S+G E+ +K K E+
Sbjct: 1933 KKTSNNKNAQKKDEQEEESNTSSSDEQIAKENKNDDENSDGEEKNEEIKKPKEIELQTEN 1992
Query: 292 EQMDKS*DPY 263
E + + + Y
Sbjct: 1993 EMIQNNENGY 2002
>ref|NP_701653.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496823|gb|AAN36377.1|AE014848_53 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1060
Score = 36.2 bits (82), Expect = 0.20
Identities = 19/47 (40%), Positives = 28/47 (59%)
Frame = -2
Query: 415 NEEMATLKQEKDNENPEETSEGNEETATLKHEKGNEINEGAEQMDKS 275
NEE ++ ++ E EE EGNEE + +GNE NEG E+ +K+
Sbjct: 627 NEENEENEESEEGEESEE-GEGNEENEGNEENEGNEENEGNEENEKN 672
>gb|EAA21180.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 2251
Score = 35.8 bits (81), Expect = 0.27
Identities = 21/64 (32%), Positives = 31/64 (47%), Gaps = 1/64 (1%)
Frame = -2
Query: 445 KKKPEEITEGNEEMATLKQEKDNENPEETSEGNEETATLKHEKGNE-INEGAEQMDKS*D 269
++K E NE + E +NEN E + NE+ ++EK NE NE + D D
Sbjct: 1762 REKENEKENENENEKENENENENENENENEKENEKENENENEKENENENENENENDSETD 1821
Query: 268 PYCD 257
P+ D
Sbjct: 1822 PWID 1825
>ref|NP_032717.1| neurofilament 3, medium; neurofilament, medium polypeptide [Mus
musculus] gi|128148|sp|P08553|NFM_MOUSE Neurofilament
triplet M protein (160 kDa neurofilament protein)
(Neurofilament medium polypeptide) (NF-M)
gi|91140|pir||S00030 neurofilament triplet M protein -
mouse gi|297529|emb|CAA29127.1| NF-M [Mus musculus]
Length = 849
Score = 35.4 bits (80), Expect = 0.35
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 454 PPAKKKPEEITEGNEEMATLKQEKDNENPEETSEGNEETATLKHEKGNEINEGAEQMDK 278
P A+K P + E EE ++E++ E EE E +E + + E+G EG+ + D+
Sbjct: 498 PEAEKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDE 556
>dbj|BAC34724.1| unnamed protein product [Mus musculus]
Length = 848
Score = 35.4 bits (80), Expect = 0.35
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 454 PPAKKKPEEITEGNEEMATLKQEKDNENPEETSEGNEETATLKHEKGNEINEGAEQMDK 278
P A+K P + E EE ++E++ E EE E +E + + E+G EG+ + D+
Sbjct: 497 PEAEKSPVKSPEAKEEEEEGEKEEEEEGQEEEEEEDEGVKSDQAEEGGSEKEGSSEKDE 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,170,096
Number of Sequences: 1393205
Number of extensions: 7882993
Number of successful extensions: 44339
Number of sequences better than 10.0: 175
Number of HSP's better than 10.0 without gapping: 40093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43632
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
