Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016281A_C01 KMC016281A_c01
(375 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S41431 GTP-binding protein, ras-like - fava bean gi|303744|... 120 6e-27
pir||S45023 GTP-binding protein Rab - alfalfa gi|488700|emb|CAA5... 119 1e-26
gb|AAN03472.1| GTP-binding protein [Glycine max] 118 2e-26
gb|AAM63927.1| guanine nucleotide regulatory protein, putative [... 99 2e-20
ref|NP_173136.1| GTP binding protein, putative; protein id: At1g... 99 2e-20
>pir||S41431 GTP-binding protein, ras-like - fava bean gi|303744|dbj|BAA02113.1|
GTP-binding protein [Pisum sativum]
gi|452361|emb|CAA82709.1| guanine nucleotide regulatory
protein [Vicia faba] gi|738937|prf||2001457E GTP-binding
protein gi|1098295|prf||2115367C small GTP-binding
protein
Length = 217
Score = 120 bits (300), Expect = 6e-27
Identities = 59/66 (89%), Positives = 64/66 (96%)
Frame = -1
Query: 375 FIETSALEASNVENAFAEVLTQIYNVVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKR 196
F+ETSALEA+NVENAFAEVLTQIY++VSKK VEGAENG ASVPAKGEKIDLKNDVSALKR
Sbjct: 152 FMETSALEATNVENAFAEVLTQIYHIVSKKTVEGAENGNASVPAKGEKIDLKNDVSALKR 211
Query: 195 VGCCST 178
VGCCS+
Sbjct: 212 VGCCSS 217
>pir||S45023 GTP-binding protein Rab - alfalfa gi|488700|emb|CAA55865.1| Rab
[Medicago sativa]
Length = 217
Score = 119 bits (297), Expect = 1e-26
Identities = 58/66 (87%), Positives = 64/66 (96%)
Frame = -1
Query: 375 FIETSALEASNVENAFAEVLTQIYNVVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKR 196
F+ETSALEA+NVEN+FAEVLTQIY ++SKKAVEGAENG ASVPAKGEKIDLKNDVSALKR
Sbjct: 152 FMETSALEATNVENSFAEVLTQIYRILSKKAVEGAENGNASVPAKGEKIDLKNDVSALKR 211
Query: 195 VGCCST 178
VGCCS+
Sbjct: 212 VGCCSS 217
>gb|AAN03472.1| GTP-binding protein [Glycine max]
Length = 217
Score = 118 bits (296), Expect = 2e-26
Identities = 59/66 (89%), Positives = 64/66 (96%)
Frame = -1
Query: 375 FIETSALEASNVENAFAEVLTQIYNVVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKR 196
F+ETSALEA+NVENAFAEVLTQIY++VSKKAVE AENGT SVPAKGEKIDLKNDVSALKR
Sbjct: 152 FMETSALEATNVENAFAEVLTQIYHIVSKKAVEVAENGTTSVPAKGEKIDLKNDVSALKR 211
Query: 195 VGCCST 178
VGCCS+
Sbjct: 212 VGCCSS 217
>gb|AAM63927.1| guanine nucleotide regulatory protein, putative [Arabidopsis
thaliana]
Length = 216
Score = 98.6 bits (244), Expect = 2e-20
Identities = 49/65 (75%), Positives = 58/65 (88%)
Frame = -1
Query: 375 FIETSALEASNVENAFAEVLTQIYNVVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKR 196
F+ETSALEA+NVE+AFAEVLTQIY + SKK VE E+G ASVP KGEKI++KNDVSALK+
Sbjct: 152 FMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVP-KGEKIEVKNDVSALKK 210
Query: 195 VGCCS 181
+GCCS
Sbjct: 211 LGCCS 215
>ref|NP_173136.1| GTP binding protein, putative; protein id: At1g16920.1, supported
by cDNA: 2904., supported by cDNA: gi_451859
[Arabidopsis thaliana] gi|3024526|sp|Q39222|RB1B_ARATH
Ras-related protein Rab11 gi|2118459|pir||S59942
GTP-binding protein Rab11 - Arabidopsis thaliana
gi|451860|gb|AAA32872.1| small GTP-binding protein
gi|9802771|gb|AAF99840.1|AC051629_7 GTP-binding protein
Rab11 [Arabidopsis thaliana]
Length = 216
Score = 98.6 bits (244), Expect = 2e-20
Identities = 49/65 (75%), Positives = 58/65 (88%)
Frame = -1
Query: 375 FIETSALEASNVENAFAEVLTQIYNVVSKKAVEGAENGTASVPAKGEKIDLKNDVSALKR 196
F+ETSALEA+NVE+AFAEVLTQIY + SKK VE E+G ASVP KGEKI++KNDVSALK+
Sbjct: 152 FMETSALEATNVEDAFAEVLTQIYRITSKKQVEAGEDGNASVP-KGEKIEVKNDVSALKK 210
Query: 195 VGCCS 181
+GCCS
Sbjct: 211 LGCCS 215
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 261,246,567
Number of Sequences: 1393205
Number of extensions: 4694654
Number of successful extensions: 15680
Number of sequences better than 10.0: 300
Number of HSP's better than 10.0 without gapping: 15447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15647
length of database: 448,689,247
effective HSP length: 100
effective length of database: 309,368,747
effective search space used: 7424849928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
