Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016274A_C01 KMC016274A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200424.1| putative protein; protein id: At5g56130.1, supp... 97 3e-19
gb|EAA03873.1| agCP2291 [Anopheles gambiae str. PEST] 37 0.37
ref|NP_115737.1| hypothetical protein MGC5469 [Homo sapiens] gi|... 36 0.48
ref|NP_082873.1| RIKEN cDNA 2410044K02 [Mus musculus] gi|1284627... 36 0.48
gb|AAH19603.1| Similar to hypothetical protein MGC5469 [Mus musc... 36 0.48
>ref|NP_200424.1| putative protein; protein id: At5g56130.1, supported by cDNA:
gi_20260441 [Arabidopsis thaliana]
gi|9758633|dbj|BAB09295.1|
gb|AAF54217.1~gene_id:MDA7.19~similar to unknown protein
[Arabidopsis thaliana] gi|20260442|gb|AAM13119.1|
unknown protein [Arabidopsis thaliana]
gi|23197932|gb|AAN15493.1| unknown protein [Arabidopsis
thaliana]
Length = 315
Score = 96.7 bits (239), Expect = 3e-19
Identities = 45/50 (90%), Positives = 47/50 (94%), Gaps = 1/50 (2%)
Frame = -1
Query: 726 RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQADEGVFRIFGFENA 580
RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKN KY DEGVFRIFGFE++
Sbjct: 266 RTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNPKYNTDEGVFRIFGFESS 315
>gb|EAA03873.1| agCP2291 [Anopheles gambiae str. PEST]
Length = 268
Score = 36.6 bits (83), Expect = 0.37
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -1
Query: 720 VHQIPCRAAMNSVEWNPKYNLLAYAGDDK--NKYQADEGVFRIFGF 589
V I AA +V W+PK +LAYA DDK N + D G +++GF
Sbjct: 221 VADISVDAATFTVAWHPKQYILAYACDDKDANDRRRDAGSLKVWGF 266
>ref|NP_115737.1| hypothetical protein MGC5469 [Homo sapiens]
gi|13905124|gb|AAH06849.1|AAH06849 Similar to RIKEN cDNA
2410044K02 gene [Homo sapiens]
Length = 351
Score = 36.2 bits (82), Expect = 0.48
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = -1
Query: 714 QIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIFGFEN 583
++ C + +V W+PK LLA+A DDK+ KY + + G ++FG N
Sbjct: 303 EVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349
>ref|NP_082873.1| RIKEN cDNA 2410044K02 [Mus musculus] gi|12846277|dbj|BAB27103.1|
unnamed protein product [Mus musculus]
Length = 351
Score = 36.2 bits (82), Expect = 0.48
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = -1
Query: 714 QIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIFGFEN 583
++ C + +V W+PK LLA+A DDK+ KY + + G ++FG N
Sbjct: 303 EVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349
>gb|AAH19603.1| Similar to hypothetical protein MGC5469 [Mus musculus]
Length = 351
Score = 36.2 bits (82), Expect = 0.48
Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = -1
Query: 714 QIPCRAAMNSVEWNPKYNLLAYAGDDKN-KYQA--DEGVFRIFGFEN 583
++ C + +V W+PK LLA+A DDK+ KY + + G ++FG N
Sbjct: 303 EVQCESPTFTVAWHPKRPLLAFACDDKDGKYDSSREAGTVKLFGLPN 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,401,225
Number of Sequences: 1393205
Number of extensions: 12175443
Number of successful extensions: 26392
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 25508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26347
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
