Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016272A_C01 KMC016272A_c01
(712 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187517.1| unknown protein; protein id: At3g09050.1 [Arabi... 97 3e-19
dbj|BAB84395.1| P0529E05.11 [Oryza sativa (japonica cultivar-gro... 78 1e-13
ref|NP_053974.1| ORF240 [Porphyra purpurea] gi|1723410|sp|P51364... 34 2.3
ref|NP_766847.1| NTP pyrophosphohydrolase [Bradyrhizobium japoni... 33 3.9
gb|EAA28198.1| predicted protein [Neurospora crassa] gi|28950206... 33 3.9
>ref|NP_187517.1| unknown protein; protein id: At3g09050.1 [Arabidopsis thaliana]
gi|5923670|gb|AAD56321.1|AC009326_8 unknown protein
[Arabidopsis thaliana]
Length = 258
Score = 96.7 bits (239), Expect = 3e-19
Identities = 51/101 (50%), Positives = 69/101 (67%), Gaps = 4/101 (3%)
Frame = -3
Query: 710 RNEGLFFKNLGQQPPVDQAKAKEEVEKIKDVAREKDGGKTRKNIYLFFMGLLAYGIVGSI 531
RNEGLFFK+L + PVD+ +A+EE EKI++V +E G K+R+NIYL +G++ I S
Sbjct: 157 RNEGLFFKSLRDKKPVDREQAREETEKIQEVTKESAGSKSRRNIYLGLIGIVVLAIADSF 216
Query: 530 ASSSGTDWRKVSLLGAVLVALFYQFINEQ----NKDKKKED 420
SS DWRKV++LGA+LV L QF+ EQ DK KE+
Sbjct: 217 VSS--PDWRKVAILGAILVPLLTQFVYEQTLLSEADKGKEN 255
>dbj|BAB84395.1| P0529E05.11 [Oryza sativa (japonica cultivar-group)]
Length = 198
Score = 77.8 bits (190), Expect = 1e-13
Identities = 39/96 (40%), Positives = 59/96 (60%), Gaps = 6/96 (6%)
Frame = -3
Query: 710 RNEGLFFKNLGQQPPVDQAKA------KEEVEKIKDVAREKDGGKTRKNIYLFFMGLLAY 549
+NEG+FFK+LG+ P ++ K K E +K+KD+A+E G KTR NIYL M +L
Sbjct: 89 KNEGMFFKSLGKVKPRNKKKLTVKPIPKLEAQKVKDIAKESAGSKTRMNIYLGLMAILGL 148
Query: 548 GIVGSIASSSGTDWRKVSLLGAVLVALFYQFINEQN 441
I ++ ++ +WRKV+ LG + + L Q I EQ+
Sbjct: 149 TIANAVFATPEVEWRKVAALGLIFIGLVAQVIYEQD 184
>ref|NP_053974.1| ORF240 [Porphyra purpurea] gi|1723410|sp|P51364|YCXN_PORPU
Hypothetical 26.5 kDa protein in ycf44-cpcG intergenic
region (ORF240) gi|2147531|pir||S73285 hypothetical
protein 240 - red alga (Porphyra purpurea) chloroplast
gi|1276830|gb|AAC08250.1| ORF240 [Porphyra purpurea]
Length = 240
Score = 33.9 bits (76), Expect = 2.3
Identities = 25/90 (27%), Positives = 44/90 (48%)
Frame = +3
Query: 195 VINFLTHILEPVVISAVVDAQQKHLEP*YINSSTGCKLLLRGLGLYIQSSNSAIPIYKCL 374
VI+ L I + +V +L N++ K+ L G+G+ + S+ + PI+ L
Sbjct: 107 VISALVIIYMGFSLLNIVPLSTNNLNTRINNTNQNIKMYLSGVGIGLAISSCSTPIFVTL 166
Query: 375 LIKIKDELELFLSSLIFFLLVLVLFIDELI 464
LI + LF+ LIF L+ + +I +I
Sbjct: 167 LIWVTSNHNLFI-GLIFILIYSIGYIFPII 195
>ref|NP_766847.1| NTP pyrophosphohydrolase [Bradyrhizobium japonicum]
gi|27348454|dbj|BAC45472.1| NTP pyrophosphohydrolase
[Bradyrhizobium japonicum USDA 110]
Length = 136
Score = 33.1 bits (74), Expect = 3.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +3
Query: 528 GNRTHYSIGQKAHEE-EVNIF-PGFAPIFFSGYIFDLFHLLLGFCLINRW 671
G R S+ ++ HEE + + P AP+ F+ Y ++ FHLL+ + RW
Sbjct: 46 GERPEQSLIRELHEELGITVAEPCLAPLTFASYGYETFHLLMPLYICRRW 95
>gb|EAA28198.1| predicted protein [Neurospora crassa] gi|28950206|emb|CAD71073.1|
hypothetical protein [Neurospora crassa]
Length = 328
Score = 33.1 bits (74), Expect = 3.9
Identities = 17/46 (36%), Positives = 24/46 (51%)
Frame = -2
Query: 684 PGAATTC*SSKSQGGGGKDQRCSQRKRWGQNQEKYLPLLHGPSGLW 547
PGA + KS+G G + S +RW Q+ K + +L G GLW
Sbjct: 280 PGAGSNQDKRKSKGKGKDEGDDSPSQRWHQDVPKLMVVLGGNEGLW 325
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,528,462
Number of Sequences: 1393205
Number of extensions: 12735402
Number of successful extensions: 34011
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 32604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33961
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
