Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016271A_C01 KMC016271A_c01
(568 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199924.1| putative protein; protein id: At5g51110.1, supp... 141 5e-33
gb|AAM66965.1| unknown [Arabidopsis thaliana] 137 1e-31
ref|NP_174274.1| hypothetical protein; protein id: At1g29810.1 [... 95 7e-19
dbj|BAC41856.1| unknown protein [Arabidopsis thaliana] gi|283729... 95 7e-19
ref|NP_791645.1| pterin-4-alpha-carbinolamine dehydratase [Pseud... 58 7e-08
>ref|NP_199924.1| putative protein; protein id: At5g51110.1, supported by cDNA:
8788., supported by cDNA: gi_15529257 [Arabidopsis
thaliana] gi|8843847|dbj|BAA97373.1|
gene_id:MWD22.5~similar to unknown protein~sp|P43335
[Arabidopsis thaliana] gi|15529258|gb|AAK97723.1|
AT5g51110/MWD22_5 [Arabidopsis thaliana]
gi|23505809|gb|AAN28764.1| At5g51110/MWD22_5
[Arabidopsis thaliana]
Length = 220
Score = 141 bits (356), Expect = 5e-33
Identities = 65/99 (65%), Positives = 83/99 (83%), Gaps = 1/99 (1%)
Frame = -2
Query: 564 LLRKXVGWRLVHEESG-LKLQCLWKLRDFKSGVELINRISKVVEAEGHFPNIHLEQPNQI 388
LL K +GW +V E+G LK++C+WK+RDF GVELINRI KV EA GH+P++HLE P Q+
Sbjct: 122 LLHKVLGWSIVDNEAGGLKIRCMWKVRDFGCGVELINRIHKVAEASGHYPSLHLESPTQV 181
Query: 387 RAVLWTASIGGLSMNDFVVAAKIGEIKTSDLAPKKRVWA 271
RA L+T+SIGGLSMNDF++AAKI +IKTSDL+P+KR WA
Sbjct: 182 RAELFTSSIGGLSMNDFIMAAKIDDIKTSDLSPRKRAWA 220
>gb|AAM66965.1| unknown [Arabidopsis thaliana]
Length = 220
Score = 137 bits (344), Expect = 1e-31
Identities = 63/99 (63%), Positives = 82/99 (82%), Gaps = 1/99 (1%)
Frame = -2
Query: 564 LLRKXVGWRLVHEESG-LKLQCLWKLRDFKSGVELINRISKVVEAEGHFPNIHLEQPNQI 388
LL K +GW +V E+G LK++C+WK++DF GVELINRI KV EA GH+P++HLE Q+
Sbjct: 122 LLHKVLGWSIVDNEAGGLKIRCMWKVKDFGCGVELINRIHKVAEASGHYPSLHLESXTQV 181
Query: 387 RAVLWTASIGGLSMNDFVVAAKIGEIKTSDLAPKKRVWA 271
RA L+T+SIGGLSMNDF++AAKI +IKTSDL+P+KR WA
Sbjct: 182 RAELFTSSIGGLSMNDFIMAAKIDDIKTSDLSPRKRAWA 220
>ref|NP_174274.1| hypothetical protein; protein id: At1g29810.1 [Arabidopsis
thaliana]
Length = 148
Score = 94.7 bits (234), Expect = 7e-19
Identities = 40/96 (41%), Positives = 64/96 (66%)
Frame = -2
Query: 564 LLRKXVGWRLVHEESGLKLQCLWKLRDFKSGVELINRISKVVEAEGHFPNIHLEQPNQIR 385
LL+K GW L ++ LKL W+++ F G++ R++ + E+EGH P++HL N ++
Sbjct: 51 LLQKVAGWDLANDNDTLKLHRSWRVKSFTKGLDFFQRVADIAESEGHHPDLHLVGWNNVK 110
Query: 384 AVLWTASIGGLSMNDFVVAAKIGEIKTSDLAPKKRV 277
+WT +IGGL+ NDF++AAKI E++ DL KK+V
Sbjct: 111 IEIWTHAIGGLTENDFILAAKINELQVEDLLRKKKV 146
>dbj|BAC41856.1| unknown protein [Arabidopsis thaliana] gi|28372932|gb|AAO39948.1|
At1g29810 [Arabidopsis thaliana]
Length = 187
Score = 94.7 bits (234), Expect = 7e-19
Identities = 40/96 (41%), Positives = 64/96 (66%)
Frame = -2
Query: 564 LLRKXVGWRLVHEESGLKLQCLWKLRDFKSGVELINRISKVVEAEGHFPNIHLEQPNQIR 385
LL+K GW L ++ LKL W+++ F G++ R++ + E+EGH P++HL N ++
Sbjct: 90 LLQKVAGWDLANDNDTLKLHRSWRVKSFTKGLDFFQRVTDIAESEGHHPDLHLVGWNNVK 149
Query: 384 AVLWTASIGGLSMNDFVVAAKIGEIKTSDLAPKKRV 277
+WT +IGGL+ NDF++AAKI E++ DL KK+V
Sbjct: 150 IEIWTHAIGGLTENDFILAAKINELQVEDLLRKKKV 185
>ref|NP_791645.1| pterin-4-alpha-carbinolamine dehydratase [Pseudomonas syringae pv.
tomato str. DC3000] gi|28852266|gb|AAO55340.1|
pterin-4-alpha-carbinolamine dehydratase [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 118
Score = 58.2 bits (139), Expect = 7e-08
Identities = 27/86 (31%), Positives = 51/86 (58%)
Frame = -2
Query: 567 KLLRKXVGWRLVHEESGLKLQCLWKLRDFKSGVELINRISKVVEAEGHFPNIHLEQPNQI 388
+LLR+ W + +S ++L+ ++ ++FK + N + ++ EAEGH P + L + ++
Sbjct: 26 ELLRQIPDWNIEVRDSVMQLEKVFLFKNFKFALAFTNAVGEIAEAEGHHPGL-LTEWGKV 84
Query: 387 RAVLWTASIGGLSMNDFVVAAKIGEI 310
W+ SI GL NDF++AA+ E+
Sbjct: 85 TVTWWSHSIKGLHRNDFIMAARTDEV 110
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,618,182
Number of Sequences: 1393205
Number of extensions: 9375929
Number of successful extensions: 20175
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 19664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20160
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
