Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016270A_C01 KMC016270A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43517|FER1_LYCES Ferredoxin I, chloroplast precursor gi|7430... 205 3e-52
emb|CAC38395.1| ferredoxin I [Solanum tuberosum] 204 5e-52
gb|AAD02175.1| ferredoxin-like protein [Capsicum annuum] 197 6e-50
sp|P09911|FER1_PEA Ferredoxin I, chloroplast precursor gi|65740|... 190 1e-47
sp|P04669|FER_SILPR Ferredoxin, chloroplast precursor gi|65746|p... 186 2e-46
>sp|Q43517|FER1_LYCES Ferredoxin I, chloroplast precursor gi|7430744|pir||T07175
ferredoxin [2Fe-2S] I precursor, chloroplast - tomato
gi|1418982|emb|CAA99756.1| ferredoxin-I [Lycopersicon
esculentum]
Length = 144
Score = 205 bits (522), Expect = 3e-52
Identities = 103/133 (77%), Positives = 113/133 (84%), Gaps = 5/133 (3%)
Frame = -1
Query: 586 SFLRSQP----LKAFPNVGQALFGLKSGCGGRVT-MAAYKVKLITPEGPFEFECPDDVYI 422
SFL +P LKA NVG+ALFGLKSG GR+T MA+YKVKLITPEGP EFECPDDVYI
Sbjct: 12 SFLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPIEFECPDDVYI 71
Query: 421 LDHAEEQGIDIPYSCRAGSCSSCAGKVVGGNVDQSDGSFLDDDQIDAGFVLTCVAYPQSD 242
LD AEE+G D+PYSCRAGSCSSCAGKV G+VDQSDG+FLD+DQ AGFVLTCVAYP+ D
Sbjct: 72 LDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGD 131
Query: 241 VVIETHKEEELTA 203
V IETHKEEELTA
Sbjct: 132 VTIETHKEEELTA 144
>emb|CAC38395.1| ferredoxin I [Solanum tuberosum]
Length = 144
Score = 204 bits (520), Expect = 5e-52
Identities = 103/133 (77%), Positives = 111/133 (83%), Gaps = 5/133 (3%)
Frame = -1
Query: 586 SFLRSQP----LKAFPNVGQALFGLKSGCGGRVT-MAAYKVKLITPEGPFEFECPDDVYI 422
SFL +P LKA NVG+ALFGLKSG GR+T MA+YKVKLITP+GP EFECPDDVYI
Sbjct: 12 SFLPRKPVVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPDGPIEFECPDDVYI 71
Query: 421 LDHAEEQGIDIPYSCRAGSCSSCAGKVVGGNVDQSDGSFLDDDQIDAGFVLTCVAYPQSD 242
LD AEE+G D+PYSCRAGSCSSCAGKV G VDQSDG FLDDDQ AGFVLTCVAYP+ D
Sbjct: 72 LDQAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGKFLDDDQEAAGFVLTCVAYPKCD 131
Query: 241 VVIETHKEEELTA 203
V IETHKEEELTA
Sbjct: 132 VTIETHKEEELTA 144
>gb|AAD02175.1| ferredoxin-like protein [Capsicum annuum]
Length = 144
Score = 197 bits (502), Expect = 6e-50
Identities = 96/131 (73%), Positives = 111/131 (84%), Gaps = 5/131 (3%)
Frame = -1
Query: 586 SFLRSQP----LKAFPNVGQALFGLKSGCGGRVT-MAAYKVKLITPEGPFEFECPDDVYI 422
SF+ +P LK PNVG+ALFGLKS GG+VT MA+YKVKLITP+GP EF+CPD+VYI
Sbjct: 12 SFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPIEFDCPDNVYI 71
Query: 421 LDHAEEQGIDIPYSCRAGSCSSCAGKVVGGNVDQSDGSFLDDDQIDAGFVLTCVAYPQSD 242
LD AEE G D+PYSCRAGSCSSCAGK+ GG VDQ+DG+FLDDDQ++ G+VLTCVAYPQSD
Sbjct: 72 LDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSD 131
Query: 241 VVIETHKEEEL 209
V IETHKE EL
Sbjct: 132 VTIETHKEAEL 142
>sp|P09911|FER1_PEA Ferredoxin I, chloroplast precursor gi|65740|pir||FEPM1 ferredoxin
[2Fe-2S] I precursor - garden pea
gi|169087|gb|AAA33665.1| ferredoxin I precursor
Length = 149
Score = 190 bits (483), Expect = 1e-47
Identities = 99/138 (71%), Positives = 109/138 (78%), Gaps = 10/138 (7%)
Frame = -1
Query: 586 SFLRSQPL-------KAFPNVGQALFGLKSGCGG---RVTMAAYKVKLITPEGPFEFECP 437
SFLR+QP+ KAF N GLK+ V MA+YKVKL+TP+G EFECP
Sbjct: 15 SFLRTQPMPMSVTTTKAFSN---GFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECP 71
Query: 436 DDVYILDHAEEQGIDIPYSCRAGSCSSCAGKVVGGNVDQSDGSFLDDDQIDAGFVLTCVA 257
DVYILDHAEE GID+PYSCRAGSCSSCAGKVVGG VDQSDGSFLDD+QI+AGFVLTCVA
Sbjct: 72 SDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVA 131
Query: 256 YPQSDVVIETHKEEELTA 203
YP SDVVIETHKEE+LTA
Sbjct: 132 YPTSDVVIETHKEEDLTA 149
>sp|P04669|FER_SILPR Ferredoxin, chloroplast precursor gi|65746|pir||FEQH ferredoxin
[2Fe-2S] precursor - white campion
gi|21362|emb|CAA26281.1| ferredoxin precursor [Silene
latifolia subsp. alba]
Length = 146
Score = 186 bits (471), Expect = 2e-46
Identities = 95/130 (73%), Positives = 107/130 (82%), Gaps = 5/130 (3%)
Frame = -1
Query: 577 RSQPLKAFP---NVGQALFGLKSGCGGRVT-MAAYKVKLITPE-GPFEFECPDDVYILDH 413
+ QP+ A N+GQALFGLK+G GRVT MA YKV LIT E G F+CPDDVY+LD
Sbjct: 17 KQQPMVASSLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQ 76
Query: 412 AEEQGIDIPYSCRAGSCSSCAGKVVGGNVDQSDGSFLDDDQIDAGFVLTCVAYPQSDVVI 233
AEE+GID+PYSCRAGSCSSCAGKVV G+VDQSD SFLDDDQI+AG+VLTC AYP +DV I
Sbjct: 77 AEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTI 136
Query: 232 ETHKEEELTA 203
ETHKEEELTA
Sbjct: 137 ETHKEEELTA 146
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,484,876
Number of Sequences: 1393205
Number of extensions: 11635266
Number of successful extensions: 30459
Number of sequences better than 10.0: 532
Number of HSP's better than 10.0 without gapping: 28685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30267
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
