Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016269A_C01 KMC016269A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL73395.1|AF432345_1 26S proteasome regulatory subunit IV [T... 177 8e-44
dbj|BAB78491.1| 26S proteasome regulatory particle triple-A ATPa... 176 2e-43
sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (... 176 2e-43
gb|AAK50114.1|AF372977_1 At2g20140/T2G17.6 [Arabidopsis thaliana] 172 2e-42
gb|AAM65126.1| 26S proteasome subunit 4 [Arabidopsis thaliana] 172 2e-42
>gb|AAL73395.1|AF432345_1 26S proteasome regulatory subunit IV [Tortula ruralis]
Length = 446
Score = 177 bits (449), Expect = 8e-44
Identities = 87/91 (95%), Positives = 90/91 (98%)
Frame = -1
Query: 578 KIEFPLPDTKTRRRIFLIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 399
KIEFPLPDTKTRRRIF IHTSRMT+ADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE
Sbjct: 356 KIEFPLPDTKTRRRIFQIHTSRMTMADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 415
Query: 398 RRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 306
RRMKVTHADFKKAK+KVM+KKKEGVPEGLYM
Sbjct: 416 RRMKVTHADFKKAKEKVMYKKKEGVPEGLYM 446
>dbj|BAB78491.1| 26S proteasome regulatory particle triple-A ATPase subunit2b [Oryza
sativa (japonica cultivar-group)]
Length = 450
Score = 176 bits (445), Expect = 2e-43
Identities = 87/91 (95%), Positives = 89/91 (97%)
Frame = -1
Query: 578 KIEFPLPDTKTRRRIFLIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 399
KIEFPLPD KTRRRIF IHTS+MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE
Sbjct: 360 KIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 419
Query: 398 RRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 306
RRMKVTHADFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 420 RRMKVTHADFKKAKEKVMFKKKEGVPEGLYM 450
>sp|P46466|PRS4_ORYSA 26S PROTEASE REGULATORY SUBUNIT 4 HOMOLOG (TAT-BINDING PROTEIN
HOMOLOG 2) gi|7435744|pir||T03776 tat binding protein
homolog - rice gi|556558|dbj|BAA04615.1| rice homologue
of Tat binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 448
Score = 176 bits (445), Expect = 2e-43
Identities = 87/91 (95%), Positives = 89/91 (97%)
Frame = -1
Query: 578 KIEFPLPDTKTRRRIFLIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 399
KIEFPLPD KTRRRIF IHTS+MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE
Sbjct: 358 KIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 417
Query: 398 RRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 306
RRMKVTHADFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 418 RRMKVTHADFKKAKEKVMFKKKEGVPEGLYM 448
>gb|AAK50114.1|AF372977_1 At2g20140/T2G17.6 [Arabidopsis thaliana]
Length = 443
Score = 172 bits (437), Expect = 2e-42
Identities = 85/91 (93%), Positives = 88/91 (96%)
Frame = -1
Query: 578 KIEFPLPDTKTRRRIFLIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 399
KIEFPLPD KTRRRIF IHTS+MTLA+DVNLEEFVMTKDEFSGADIKAICTEAGLLALRE
Sbjct: 353 KIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 412
Query: 398 RRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 306
RRMKVTH DFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 413 RRMKVTHVDFKKAKEKVMFKKKEGVPEGLYM 443
>gb|AAM65126.1| 26S proteasome subunit 4 [Arabidopsis thaliana]
Length = 443
Score = 172 bits (437), Expect = 2e-42
Identities = 85/91 (93%), Positives = 88/91 (96%)
Frame = -1
Query: 578 KIEFPLPDTKTRRRIFLIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 399
KIEFPLPD KTRRRIF IHTS+MTLA+DVNLEEFVMTKDEFSGADIKAICTEAGLLALRE
Sbjct: 353 KIEFPLPDIKTRRRIFQIHTSKMTLAEDVNLEEFVMTKDEFSGADIKAICTEAGLLALRE 412
Query: 398 RRMKVTHADFKKAKDKVMFKKKEGVPEGLYM 306
RRMKVTH DFKKAK+KVMFKKKEGVPEGLYM
Sbjct: 413 RRMKVTHVDFKKAKEKVMFKKKEGVPEGLYM 443
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,410,442
Number of Sequences: 1393205
Number of extensions: 9806239
Number of successful extensions: 20311
Number of sequences better than 10.0: 862
Number of HSP's better than 10.0 without gapping: 19591
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20238
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
