Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016268A_C01 KMC016268A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52391 hypothetical protein MMB12.10 [imported] - Arabidops... 150 1e-35
ref|NP_188597.1| unknown protein; protein id: At3g19630.1 [Arabi... 150 1e-35
ref|NP_289070.1| orf, hypothetical protein [Escherichia coli O15... 79 5e-14
ref|NP_311406.1| hypothetical protein [Escherichia coli O157:H7]... 79 5e-14
ref|NP_708356.1| orf, conserved hypothetical protein [Shigella f... 78 8e-14
>pir||T52391 hypothetical protein MMB12.10 [imported] - Arabidopsis thaliana
gi|9294428|dbj|BAB02548.1|
gb|AAF41683.1~gene_id:MMB12.10~similar to unknown
protein [Arabidopsis thaliana]
Length = 382
Score = 150 bits (378), Expect = 1e-35
Identities = 77/110 (70%), Positives = 90/110 (81%), Gaps = 1/110 (0%)
Frame = -2
Query: 542 ILIEYIMLDGVNDEEQHAHQLGKLLQTFQVVVNLIPFNSIGILSEFKPSSEQKVSKFQKI 363
I IEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFN IG S+F+ SS Q VS+FQKI
Sbjct: 273 IFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKI 332
Query: 362 LRGSYNIRTTVRKQMGEDISGACGQLVVNLPD-KSLGNQDPLTDIEDLVI 216
LR +Y IRTT+RK+MG+DISGACGQLVVN PD K L DIEDL++
Sbjct: 333 LRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIEDLLL 382
>ref|NP_188597.1| unknown protein; protein id: At3g19630.1 [Arabidopsis thaliana]
gi|28393068|gb|AAO41968.1| unknown protein [Arabidopsis
thaliana] gi|28827394|gb|AAO50541.1| unknown protein
[Arabidopsis thaliana]
Length = 372
Score = 150 bits (378), Expect = 1e-35
Identities = 77/110 (70%), Positives = 90/110 (81%), Gaps = 1/110 (0%)
Frame = -2
Query: 542 ILIEYIMLDGVNDEEQHAHQLGKLLQTFQVVVNLIPFNSIGILSEFKPSSEQKVSKFQKI 363
I IEYIMLDGVND+EQHAH LG+LL+TFQVV+NLIPFN IG S+F+ SS Q VS+FQKI
Sbjct: 263 IFIEYIMLDGVNDQEQHAHLLGELLKTFQVVINLIPFNPIGSTSQFETSSIQGVSRFQKI 322
Query: 362 LRGSYNIRTTVRKQMGEDISGACGQLVVNLPD-KSLGNQDPLTDIEDLVI 216
LR +Y IRTT+RK+MG+DISGACGQLVVN PD K L DIEDL++
Sbjct: 323 LRETYKIRTTIRKEMGQDISGACGQLVVNQPDIKKTPGTVELRDIEDLLL 372
>ref|NP_289070.1| orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
gi|25320177|pir||G85895 hypothetical protein yfgB
[imported] - Escherichia coli (strain O157:H7,
substrain EDL933) gi|12516911|gb|AAG57627.1|AE005481_3
orf, hypothetical protein [Escherichia coli O157:H7
EDL933]
Length = 384
Score = 78.6 bits (192), Expect = 5e-14
Identities = 41/94 (43%), Positives = 59/94 (62%)
Frame = -2
Query: 542 ILIEYIMLDGVNDEEQHAHQLGKLLQTFQVVVNLIPFNSIGILSEFKPSSEQKVSKFQKI 363
+ IEY+MLD VND +HAHQL +LL+ +NLIP+N + + SS ++ +F K+
Sbjct: 275 VTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFP-AAPYGRSSNSRIDRFSKV 333
Query: 362 LRGSYNIRTTVRKQMGEDISGACGQLVVNLPDKS 261
L SY T VRK G+DI ACGQL ++ D++
Sbjct: 334 LM-SYGFTTIVRKTRGDDIDAACGQLAGDVIDRT 366
>ref|NP_311406.1| hypothetical protein [Escherichia coli O157:H7]
gi|25320163|pir||C91051 hypothetical protein ECs3379
[imported] - Escherichia coli (strain O157:H7,
substrain RIMD 0509952) gi|13362849|dbj|BAB36802.1|
hypothetical protein [Escherichia coli O157:H7]
Length = 384
Score = 78.6 bits (192), Expect = 5e-14
Identities = 41/94 (43%), Positives = 59/94 (62%)
Frame = -2
Query: 542 ILIEYIMLDGVNDEEQHAHQLGKLLQTFQVVVNLIPFNSIGILSEFKPSSEQKVSKFQKI 363
+ IEY+MLD VND +HAHQL +LL+ +NLIP+N + + SS ++ +F K+
Sbjct: 275 VTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFP-AAPYGRSSNSRIDRFSKV 333
Query: 362 LRGSYNIRTTVRKQMGEDISGACGQLVVNLPDKS 261
L SY T VRK G+DI ACGQL ++ D++
Sbjct: 334 LM-SYGFTTIVRKTRGDDIDAACGQLAGDVIDRT 366
>ref|NP_708356.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|24052937|gb|AAN44063.1|AE015271_9 orf, conserved
hypothetical protein [Shigella flexneri 2a str. 301]
Length = 384
Score = 77.8 bits (190), Expect = 8e-14
Identities = 41/94 (43%), Positives = 59/94 (62%)
Frame = -2
Query: 542 ILIEYIMLDGVNDEEQHAHQLGKLLQTFQVVVNLIPFNSIGILSEFKPSSEQKVSKFQKI 363
+ IEY+MLD VND +HAHQL +LL+ +NLIP+N + + SS ++ +F K+
Sbjct: 275 VTIEYVMLDHVNDGTEHAHQLAELLKDTPCKINLIPWNPFPD-APYGRSSNSRIDRFSKV 333
Query: 362 LRGSYNIRTTVRKQMGEDISGACGQLVVNLPDKS 261
L SY T VRK G+DI ACGQL ++ D++
Sbjct: 334 LM-SYGFTTIVRKTRGDDIDAACGQLAGDVIDRT 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,485,497
Number of Sequences: 1393205
Number of extensions: 7753980
Number of successful extensions: 16486
Number of sequences better than 10.0: 133
Number of HSP's better than 10.0 without gapping: 16005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16352
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
