Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC016267A_C01 KMC016267A_c01
(677 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567900.1| expressed protein; protein id: At4g32680.1, sup... 67 2e-10
pir||T04458 hypothetical protein F4D11.120 - Arabidopsis thalian... 67 2e-10
gb|AAK43854.1|AF370477_1 Unknown protein [Arabidopsis thaliana] ... 63 3e-09
dbj|BAB63805.1| P0423B08.14 [Oryza sativa (japonica cultivar-gro... 60 3e-08
sp|P34127|MYBH_DICDI Myb-like protein gi|4467385|emb|CAB37862.1|... 42 0.006
>ref|NP_567900.1| expressed protein; protein id: At4g32680.1, supported by cDNA:
35221., supported by cDNA: gi_13877552 [Arabidopsis
thaliana]
Length = 282
Score = 67.0 bits (162), Expect = 2e-10
Identities = 41/135 (30%), Positives = 77/135 (56%), Gaps = 4/135 (2%)
Frame = -3
Query: 618 IIPSDISSAINSSRGTRFFCSIIMAMWVIAAYGGLFSLLGIHLVKSVVIGFRPIYIVLLT 439
I P I +AI++S R F ++ +A+ VI ++ G FS LG ++ FRP+++++LT
Sbjct: 156 ITPKHIGAAIDASEYARMFTALAIALVVILSHLG-FSSLGN------IVSFRPVFLLVLT 208
Query: 438 NWSVVAARLFAGRQRGFGRLSRRGSDETLASSGDWGA----QLARTLEIGLLLQSVLDAV 271
+ ++V R+ LS RG + + + G Q+ LE ++++ ++DA+
Sbjct: 209 DATIVLGRVL---------LSHRGDSSSASGTVMSGQGIVDQVGNALETVMMVKKIMDAL 259
Query: 270 FMDCAVYAIVLVCGL 226
MD ++YA++L+CGL
Sbjct: 260 LMDFSLYAVILICGL 274
>pir||T04458 hypothetical protein F4D11.120 - Arabidopsis thaliana
gi|3063702|emb|CAA18593.1| hypothetical protein
[Arabidopsis thaliana] gi|7270172|emb|CAB79985.1|
hypothetical protein [Arabidopsis thaliana]
Length = 338
Score = 67.0 bits (162), Expect = 2e-10
Identities = 41/135 (30%), Positives = 77/135 (56%), Gaps = 4/135 (2%)
Frame = -3
Query: 618 IIPSDISSAINSSRGTRFFCSIIMAMWVIAAYGGLFSLLGIHLVKSVVIGFRPIYIVLLT 439
I P I +AI++S R F ++ +A+ VI ++ G FS LG ++ FRP+++++LT
Sbjct: 156 ITPKHIGAAIDASEYARMFTALAIALVVILSHLG-FSSLGN------IVSFRPVFLLVLT 208
Query: 438 NWSVVAARLFAGRQRGFGRLSRRGSDETLASSGDWGA----QLARTLEIGLLLQSVLDAV 271
+ ++V R+ LS RG + + + G Q+ LE ++++ ++DA+
Sbjct: 209 DATIVLGRVL---------LSHRGDSSSASGTVMSGQGIVDQVGNALETVMMVKKIMDAL 259
Query: 270 FMDCAVYAIVLVCGL 226
MD ++YA++L+CGL
Sbjct: 260 LMDFSLYAVILICGL 274
>gb|AAK43854.1|AF370477_1 Unknown protein [Arabidopsis thaliana] gi|23198340|gb|AAN15697.1|
Unknown protein [Arabidopsis thaliana]
Length = 281
Score = 63.2 bits (152), Expect = 3e-09
Identities = 41/135 (30%), Positives = 77/135 (56%), Gaps = 4/135 (2%)
Frame = -3
Query: 618 IIPSDISSAINSSRGTRFFCSIIMAMWVIAAYGGLFSLLGIHLVKSVVIGFRPIYIVLLT 439
I P I +AI++S R F ++ +A+ VI ++ G FS LG ++ FRP+++++LT
Sbjct: 156 ITPKHIGAAIDASEYARMFTALAIALVVILSHLG-FSSLGN------IVSFRPVFLLVLT 208
Query: 438 NWSVVAARLFAGRQRGFGRLSRRGSDETLASSGDWGA----QLARTLEIGLLLQSVLDAV 271
+ ++V R+ LS RG + + + G Q+ LE ++++ ++DA+
Sbjct: 209 DATIVLGRVL---------LSHRGDSSSASGTVTSGQGIVDQVGNALETVMMVK-IMDAL 258
Query: 270 FMDCAVYAIVLVCGL 226
MD ++YA++L+CGL
Sbjct: 259 LMDFSLYAVILICGL 273
>dbj|BAB63805.1| P0423B08.14 [Oryza sativa (japonica cultivar-group)]
Length = 298
Score = 60.1 bits (144), Expect = 3e-08
Identities = 39/127 (30%), Positives = 70/127 (54%)
Frame = -3
Query: 612 PSDISSAINSSRGTRFFCSIIMAMWVIAAYGGLFSLLGIHLVKSVVIGFRPIYIVLLTNW 433
P +I+ AI+++ RF S+I+ V+ + GL +G + K V++ RPI +++TN
Sbjct: 180 PHEITQAISATEYNRFLASVIIGFLVVLSNWGLD--VGGTITK-VLVATRPILFLIVTNI 236
Query: 432 SVVAARLFAGRQRGFGRLSRRGSDETLASSGDWGAQLARTLEIGLLLQSVLDAVFMDCAV 253
++V L + + R + L S+ + G + LEIGLLLQ L + +DC+V
Sbjct: 237 TIVFTLLMENKDPN---VRGRPAGSNLGSADNLG----QMLEIGLLLQKALSTLLIDCSV 289
Query: 252 YAIVLVC 232
A++++C
Sbjct: 290 CAVIMIC 296
>sp|P34127|MYBH_DICDI Myb-like protein gi|4467385|emb|CAB37862.1| Myb protein
[Dictyostelium discoideum]
Length = 451
Score = 42.4 bits (98), Expect = 0.006
Identities = 38/122 (31%), Positives = 54/122 (44%), Gaps = 14/122 (11%)
Frame = +1
Query: 253 NSTIH--EHSIQHTLQQQPNLQCPSKL---STPI-------TRRS*SLITSPPR*PPKPS 396
N+ +H H+I+H+L Q N P + S+PI T S +LIT PP PP
Sbjct: 303 NNNVHLKSHAIEHSLSSQDNQDSPKSIITSSSPIPTTTTTTTTTSTTLITPPP--PPLLP 360
Query: 397 LPPS--KKPRRNNTPIRQQNNVDWPKAYHNTLNQMDTQQ*EQTPISCNNPHGHNNGAEKP 570
PPS KK ++ P ++ TL+Q Q E +PI N NN + P
Sbjct: 361 PPPSINKKEKKFKQPKKRN-----ASEIEQTLSQPHINQHESSPIVFENISNGNNKIDIP 415
Query: 571 GS 576
+
Sbjct: 416 AA 417
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 610,944,671
Number of Sequences: 1393205
Number of extensions: 14437389
Number of successful extensions: 57846
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 49676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56712
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
